Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtctttggaagcaagtcgattgagaatttatcagtttcattggtatactacatagtgacatttcgttttgcatatgaatttgttgttctcagGTCATAGAACCATAGGTGTAATCACAAAG

Basic information

species Arabidopsis thaliana
transcript AT2G14120.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116443268|gb|EG485860.1|EG485860
EST:     TTTAGCAAATTCAGATGCATTACAAATCGCAGGAAATGCTGATCCTGATG                         GTCATAGAACCATAGGTGTAATCACAAAG
genomic: TTTAGCAAATTCAGATGCATTACAAATCGCAGGAAATGCTGATCCTGATGgtgagtcttt ... ttgttctcagGTCATAGAACCATAGGTGTAATCACAAAG
EST: gi|125292054|gb|EL306139.1|EL306139
EST:     TTTAGCAAATTCAGATGCATTACAAATCGCAGGAAATGCTGATCCTGATG                         GTCATAGAACCATAGGTGTAATCACAAAG
genomic: TTTAGCAAATTCAGATGCATTACAAATCGCAGGAAATGCTGATCCTGATGgtgagtcttt ... ttgttctcagGTCATAGAACCATAGGTGTAATCACAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattggtatactacatagtgacatttcgttttgcatatgaatttgttgttctcagGTCATAGAACCATAGGTGTAATCACAAAG
                                             ttgttctc  CT-rich tract
                                  atatgaattt  TA-rich tract