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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttacttgttgaaactttgtttattgtttatgttgttgtcttagttgttgacatgattgattttgatataacagTGACTGACCTGAAGAGATTAGAGGAGCAAGCTAGAGATGGACCTTCTGATCCTAATGCTTTGGCTAAATGGCGGATTCTTAATCGGTTACATGACCGAAA

Basic information

species Arabidopsis thaliana
transcript AT2G13560.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G13560.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA03G24630.1 (Glycine max), 3'ss of exon 2
-------gtaagttttacttgttgaaactttgtttat-tgtttatgttgttgtcttagttgttgaca--tgattgatt----------ttgatataacagTGACTGACCTGAAGAGATTAGAGGAGCAAGCTAGAGATGGACCTTCTGATCCTAATGCTTTGGCTAAATGGCGGATTCTTAATCGGTTACATGACCGAAA
         |  |||| ||| ||      |||| ||| | | | |    || | ||||| ||  | |  | ||| |||          |||   |  |||||  ||| ||||||||  | || |  |||||||||||||||||||||||||||||||| ||||| || |||||||| ||||| || || |||||| ||||
aggattctgatttttttcttcttatgcagttgtatatatatatttacctttttgttagtagtctataattaatttattgctaaaatccttgtgctggcagTGGTTGATCTGAAGAGGCTTGAAGTTCAAGCTAGAGATGGACCTTCTGATCCTAATGCATTGGCCAAGTGGCGGATACTTAACCGCTTGCATGACAGAAA

upper sequence: AT2G13560.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv15s0021g00500.t01 (Vitis vinifera), 3'ss of exon 2
----------gtaagttttact-tgttgaaactttgtttattgtttatgttgttgtcttagt----tgttgacatgattg-----attttgatataacagTGACTGACCTGAAGAGATTAGAGGAGCAAGCTAGAGATGGACCTTCTGATCCTAATGCTTTGGCTAAATGGCGGATTCTTAATCGGTTACATGACCGAAA
          || |   |   | |||  |     | |||    ||||      ||||||| |      || | || ||||     |||||    | ||||||  ||||||||||||| | || | | | || ||||||||||| ||||||||  ||||||||||||| |||||||| ||||| |||||||||||| ||||
tagaaatggtgtgatactccttgtgtgcaggtgatattttccttttaaaacagtgtcttaatgttccattaatatcattgttatgatttttgatttacagTGGTTGACCTGAAGAGACTTGAAGTGAATGCAAGAGATGGACCCTCTGATCCATATGCTTTGGCTAAGTGGCGGATACTTAACCGGTTACATGACAGAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164208797|gb|ES014304.1|ES014304
EST:     CTTCTTCCTCCTAATGTTATGGACTCTGAGCAACAGATTTTTTCGTTTTA                         TGACTGACCTGAAGA
genomic: CTTCTTCCTCCTAATGTTATGGACTCTGAGCAACAGATTTTT-CGTTTTAgtaagtttta ... gatataacagTGACTGACCTGAAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttattgtttatgttgttgtcttagttgttgacatgattgattttgatataacagTGACTGACCTGAAGAGATTAGAGGAGCAAGCTAGAGATGGACCTTCTGATCCTAATGCTTTGGCTAAATGGCGGATTCTTAATCGGTTACATGACCGAAA
                                    attgattttgatataa  TA-rich tract