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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtctttacctttatgattagagattgttttgggaaaattgtggtttaaaaagtttgatacttttggtagGAGTGCTATTCAGGAAATGGTTGTACGTGGTGCTCCTGCTATAGCTATTGCTGCTGCTCTTTCTTTGGCTGTTGAAGTTTTCAACTTTCATGGTTTTGAT

Basic information

species Arabidopsis thaliana
transcript AT2G05830.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116462299|gb|EG504891.1|EG504891
EST:     TCAGATGGATGG
genomic: TCAGATGGAT-G
EST: gi|47831314|gb|CK120998.1|CK120998
EST:     CAGTTACTCGATCAGATGGATG
genomic: CAGTTACTCGATCAGATGGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattagagattgttttgggaaaattgtggtttaaaaagtttgatacttttggtagGAGTGCTATTCAGGAAATGGTTGTACGTGGTGCTCCTGCTATAGCTATTGCTGCTGCTCTTTCTTTGGCTGTTGAAGTTTTCAACTTTCATGGTTTTGAT
                                     gtttgat  putative branch site (score: 5)
                                           tactttt  CT-rich tract
                             tttaaaaagtttgata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaagtctttacctttatgattagagattgttttgggaaaattgtggtttaaaaagtttgatacttttggtagGAGTGCTATTCAGGAAATGGTTGTACGTGGTGCTCCTGCTATAGCTATTGCTGCTGCTCTTTCTTTGGCTGTTGAAGTTTTCAACTTTCATGGTTTTGAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG