1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtatcaacttgtagtttatgtaacttttgattcatatcgttttgactaaatcttttggaactaataataatgaaagtttgtgaatgattttgctttgcagAGAAGTTTTTAAGATAAGAAGTTTTTTAGAGATGAATTTCACAGAATCAATGAACGTTGTGCACGCCAGAATCCAACAACTTGAACCAGAGAATGCAGCA
species | Arabidopsis thaliana |
transcript | AT2G05160.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACTAATCCTTCTCGGAAAATCATTTGCTGACGGATAATTTTTCACCAAG AGAAGTTTTTAAGATAAGAAGTTTTTTAGAGATGAATTTCACAGAATCAATEST: gi|116400966|gb|EG443558.1|EG443558
genomic: GACTAATCCTTCTCGGAAAATCATTTGCTGACGGATAATTTTTCACCAAGgtaaaatttt ... tgctttgcagAGAAGTTTTTAAGATAAGAAGTTTTTTAGAGATGAATTTCACAGAATCAAT
EST: GACTAATCCTTCTCGGAAAATCATTTGCTGACGGATAATTTTTCACCAAG AGAAGTTTTTAAGATAAGAAGTTTTTTAGAGATGAATTTCACAGAATCAATEST: gi|116400968|gb|EG443560.1|EG443560
genomic: GACTAATCCTTCTCGGAAAATCATTTGCTGACGGATAATTTTTCACCAAGgtaaaatttt ... tgctttgcagAGAAGTTTTTAAGATAAGAAGTTTTTTAGAGATGAATTTCACAGAATCAAT
EST: GACTAATCCTTCTCGGAAAATCATTTGCTGACGGATAATTTTTCACCAAG AGAAGTTTTTAAGATAAGAAGTTTTTTAGAGATGAGTTTCACAGAATCAATEST: gi|116390803|gb|EG433395.1|EG433395
genomic: GACTAATCCTTCTCGGAAAATCATTTGCTGACGGATAATTTTTCACCAAGgtaaaatttt ... tgctttgcagAGAAGTTTTTAAGATAAGAAGTTTTTTAGAGATGAATTTCACAGAATCAAT
EST: GACTAATCCTTCTCGGAAAATCATTTGCTGACGGATAATTTTTCACCAAG AGAAGTTTTTAAGATAAGAAGTTTTTTAGAGATGAATTTCACAGAATCAATEST: gi|116400964|gb|EG443556.1|EG443556
genomic: GACTAATCCTTCTCGGAAAATCATTTGCTGACGGATAATTTTTCACCAAGgtaaaatttt ... tgctttgcagAGAAGTTTTTAAGATAAGAAGTTTTTTAGAGATGAATTTCACAGAATCAAT
EST: GACTAATCCTTCTCGGAAAATCATTTGCTGACGGATAATTTTTCACCAAG AGAAGTTTTTAAGATAAGAAGTTTTTTAGAGATGAATTTCACAGAATCGAT
genomic: GACTAATCCTTCTCGGAAAATCATTTGCTGACGGATAATTTTTCACCAAGgtaaaatttt ... tgctttgcagAGAAGTTTTTAAGATAAGAAGTTTTTTAGAGATGAATTTCACAGAATCAAT
ctaaatcttttggaactaataataatgaaagtttgtgaatgattttgctttgcagAGAAGTTTTTAAGATAAGAAGTTTTTTAGAGATGAATTTCACAGAATCAATGAACGTTGTGCACGCCAGAATCCAACAACTTGAACCAGAGAATGCAGCA
aactaat putative branch site (score: 2)
ttttgcttt putative PPT
aactaataataatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcaacttgtagtttatgtaacttttgattcatatcgttttgactaaatcttttggaactaataataatgaaagtttgtgaatgattttgctttgcagAGAAGTTTTTAAGATAAGAAGTTTTTTAGAGATGAATTTCACAGAATCAATGAACGTTGTGCACGCCAGAATCCAACAACTTGAACCAGAGAATGCAGCA
- - - - - - - - - - - - - - - - - - - - - -gactaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgaaa