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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttattatttgtagaagagagattgacattgcttattattattactaggctgattagaatgtgttggtgtgagtagGAAGGAGTAGAGGAAGATGCTGATATCAAGGAGAACGATGATGTTAATGTTGACCCTTTGGAAACAGAAGATAAGGTTGAAACAGAACCTGTGCAACGCC

Basic information

species Arabidopsis thaliana
transcript AT2G04630.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877353|gb|AU238184.1|AU238184
EST:     ATATGAAGATGAGCCAGCAGAGCCTGAGATCGAA                         GAAGGAGTAGAGGAAGATGCTGATATCAAGGAGAACGATGATGTTAATGTT
genomic: ATATGAAGATGAGCCAGCAGAGCCTGAGATCGAAgtaagttatt ... gtgtgagtagGAAGGAGTAGAGGAAGATGCTGATATCAAGGAGAACGATGATGTTAATGTT
EST: gi|86074796|gb|DR370553.1|DR370553
EST:     ATATGAAGATGAGCCAGCAGAGCCTGAGATCGAA                         GAAGGAGTAGAGGAAGATGCTGATATCAAGGAGAACGATGATGTTAATGTT
genomic: ATATGAAGATGAGCCAGCAGAGCCTGAGATCGAAgtaagttatt ... gtgtgagtagGAAGGAGTAGAGGAAGATGCTGATATCAAGGAGAACGATGATGTTAATGTT
EST: gi|116437351|gb|EG479943.1|EG479943
EST:     ATATGAAGATGAGCCAGCAGAGCCTGAGATCGAA                         GAAGGAGTAGAGGAAGATGCTGATATCAAGGAGAACGATGATGTTAATGTT
genomic: ATATGAAGATGAGCCAGCAGAGCCTGAGATCGAAgtaagttatt ... gtgtgagtagGAAGGAGTAGAGGAAGATGCTGATATCAAGGAGAACGATGATGTTAATGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgacattgcttattattattactaggctgattagaatgtgttggtgtgagtagGAAGGAGTAGAGGAAGATGCTGATATCAAGGAGAACGATGATGTTAATGTTGACCCTTTGGAAACAGAAGATAAGGTTGAAACAGAACCTGTGCAACGCC
      attgcttattattatt  TA-rich tract