1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaagactttctttttacaagacttttcttttcagagctttgtgtgagtttttcttaatggtggttgtcttttggttcttcagATGAAGGAGCTAAATCCGCTTGACGTGCTGAAGAAAGCTGTAGAGGATGCTCCTCCTACTAGGGATTTTGTTGGGGCTCTTAGGATGGCTCATAAAAGAA
species | Arabidopsis thaliana |
transcript | AT2G04400.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTAATATCTTGGAGGAGATCACATGGTACAAAGACGTAGAAGTTTCCCGG ATGAAGGAGCTAAATCCGCTTGACGTGCTGAAGAAAGCTGTAGAGGATGCTEST: gi|116404642|gb|EG447234.1|EG447234
genomic: GTAATATCTTGGAGGAGATCACATGGTACAAAGACGTAGAAGTTTCCCGGgtaaagactt ... ggttcttcagATGAAGGAGCTAAATCCGCTTGACGTGCTGAAGAAAGCTGTAGAGGATGCT
EST: GTAATATCTTGGAGGAGATCACATGGTACAAAGACGTAGAAGTTTCCCGG ATGAAGGAGCTAAATCCGCTTGACGTGCTGAA
genomic: GTAATATCTTGGAGGAGATCACATGGTACAAAGACGTAGAAGTTTCCCGGgtaaagactt ... ggttcttcagATGAAGGAGCTAAATCCGCTTGACGTGCTGAA
ttttcagagctttgtgtgagtttttcttaatggtggttgtcttttggttcttcagATGAAGGAGCTAAATCCGCTTGACGTGCTGAAGAAAGCTGTAGAGGATGCTCCTCCTACTAGGGATTTTGTTGGGGCTCTTAGGATGGCTCATAAAAGAA
tcttaat putative branch site (score: 3)
tcttttggttcttc putative PPT
tttttcttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagactttctttttacaagacttttcttttcagagctttgtgtgagtttttcttaatggtggttgtcttttggttcttcagATGAAGGAGCTAAATCCGCTTGACGTGCTGAAGAAAGCTGTAGAGGATGCTCCTCCTACTAGGGATTTTGTTGGGGCTCTTAGGATGGCTCATAAAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA