1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaccatccatagtttgttcaagtgaagctcttttaggaacttcaaacactaactaatagagctctttgttggacagTAAAACACCGGCTTGGCCTTTCGTTGTGCTTTCCTTTTTCGGTGGTGTTTATGCTTTGTTACCTTATTTTGCACTGTGGAATCCTCCTTCTCCTCCTGTT
species | Arabidopsis thaliana |
transcript | AT2G04360.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTCCCACTGGTACAAG TAAAACACCGGCTTGGCCTTTCGTTGTGCTTTCCTTTTTCGGTGGTGTTTAEST: gi|116416787|gb|EG459379.1|EG459379
genomic: CTTCCCACTGGTACAAGgtaccatcca ... tgttggacagTAAAACACCGGCTTGGCCTTTCGTTGTGCTTTCCTTTTTCGGTGGTGTTTA
EST: GGTTTGTGGCCTTTGGTTTATGCCATGCTCTTGCTTCCCACTGGTACAAG TAAAACACCGGCTTGGCCTTTCGTTGTGCTTTCCTTTTTCGGTGGTGTTTAEST: gi|86069678|gb|DR365435.1|DR365435
genomic: GGTTTGTGGCCTTTGGTTTATGCCATGCTCTTGCTTCCCACTGGTACAAGgtaccatcca ... tgttggacagTAAAACACCGGCTTGGCCTTTCGTTGTGCTTTCCTTTTTCGGTGGTGTTTA
EST: GGTTTGTGGCCTTTGGTTTATGCCATGCTCTTGCTTCCCACTGGTACAAG TAAAACACCGGGTTGGCCTTTCGTTGTGCTTTCCTTTTTCGGCGGTGTTTAEST: gi|19876655|gb|AU237486.1|AU237486
genomic: GGTTTGTGGCCTTTGGTTTATGCCATGCTCTTGCTTCCCACTGGTACAAGgtaccatcca ... tgttggacagTAAAACACCGGCTTGGCCTTTCGTTGTGCTTTCCTTTTTCGGTGGTGTTTA
EST: GGTTTGTGGCCTTTGGTTTATGCCATGCTCTTGCTTCCCACTGGTACAAG TAAAACACCGGCTTGGCCTTTCGTTGTGCTTTCCTTTTTCGGTGGTGTTTA
genomic: GGTTTGTGGCCTTTGGTTTATGCCATGCTCTTGCTTCCCACTGGTACAAGgtaccatcca ... tgttggacagTAAAACACCGGCTTGGCCTTTCGTTGTGCTTTCCTTTTTCGGTGGTGTTTA
gtgaagctcttttaggaacttcaaacactaactaatagagctctttgttggacagTAAAACACCGGCTTGGCCTTTCGTTGTGCTTTCCTTTTTCGGTGGTGTTTATGCTTTGTTACCTTATTTTGCACTGTGGAATCCTCCTTCTCCTCCTGTT
ctctttgtt CT-rich tract
taactaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccatccatagtttgttcaagtgaagctcttttaggaacttcaaacactaactaatagagctctttgttggacagTAAAACACCGGCTTGGCCTTTCGTTGTGCTTTCCTTTTTCGGTGGTGTTTATGCTTTGTTACCTTATTTTGCACTGTGGAATCCTCCTTCTCCTCCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC