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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagacttcctcaacatacttatcttgactacacactgacaaacctgttagctgcagttatcatagcgtttacactaggcgaaataagtccaagcagaccaaatttcaccacacagctttctcaagtcagttacacatacattcatacacatatttgttgttggtttttgaaatgcaaagtttttttgtcacagGATAATTGGCCGTCTGTGATGTTTGCAATGGCTGGAGGAATATTTCTTAGCCTTGGGACCTTAGCAACACAATATGCTTGGGCTTTTGTTGGGTTATCTG

Basic information

species Arabidopsis thaliana
transcript AT2G03600.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G03600.3 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA02G12980.1 (Glycine max), 3'ss of exon 1
gtagacttcctcaacatacttatcttgactacacactgacaaacctgttagctgcagttatcatagcgtttacactaggcgaaataagtccaagcagaccaaatttcaccacacagctttctcaagtcagttacacatacattcatacacatatttgttgttggtttttgaaatgcaaagtt--tttttgtcacagGATAATTGGCCGTCTGTGATGTTTGCAATGGCTGGAGGAATATTTCTTAGCCTTGGGACCTTAGCAACACAATATGCTTGGGCTTTTGTTGGGTTATCTG
                                                                                       ||  ||    | || ||||       |||| ||   || |   |     ||   |   ||  | | |||     |||||| |||| ||     ||  | ||||   |||||||| ||||| |||||  ||||||| ||||  || ||| |  | |||||  |||| |  ||  |||||||||||||||||||||||||||| ||||| |
---------------------------------------------------------------------------------------gttgaatagcagcatatttt------cagccttg--aactttatattttatttgtgactattcttgtttaagagtggtttatgaa-tgtggtattgatatttgatgcagGATAACTGGCCTTCTGTTCTGTTTGCCATGGGGGGTGGAGTGGTCCTTAGTGTTGGAAATTTGTCAACACAATATGCTTGGGCTTTTGTTGGTTTATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116437776|gb|EG480368.1|EG480368
EST:     GCTCTTCTTAGGGACATGGCCAGCAATCATGACTCTAACCGAAAGACGCG                         GATAATTGGCCGTCTGTGATGTTTGCAATGGCTGGAGGAATATTTCTTAGC
genomic: GCTCTTCTTAGGGACATGGCCAGCAATCATGACTCTAACCGAAAGACGCGgtagacttcc ... tttgtcacagGATAATTGGCCGTCTGTGATGTTTGCAATGGCTGGAGGAATATTTCTTAGC
EST: gi|116437778|gb|EG480370.1|EG480370
EST:     GCTCTTCTTAGGGACATGGCCAGCAATCATGACTCTAACCGAAAGACGCG                         GATAATTGGCCGTCTGTGATGTTTGCAATGGCTGGAGGAATATTTCTTAGC
genomic: GCTCTTCTTAGGGACATGGCCAGCAATCATGACTCTAACCGAAAGACGCGgtagacttcc ... tttgtcacagGATAATTGGCCGTCTGTGATGTTTGCAATGGCTGGAGGAATATTTCTTAGC
EST: gi|116437754|gb|EG480346.1|EG480346
EST:     GCTCTTCTTAGGGACATGGCCAGCAATCATGACTCTAACCGAAAGACGCG                         GATAATTGGCCGTCTGTGATGTTTGCAATGGCTGGAGGAATATTTCTTAGC
genomic: GCTCTTCTTAGGGACATGGCCAGCAATCATGACTCTAACCGAAAGACGCGgtagacttcc ... tttgtcacagGATAATTGGCCGTCTGTGATGTTTGCAATGGCTGGAGGAATATTTCTTAGC
EST: gi|116437773|gb|EG480365.1|EG480365
EST:     GCTCTTCTTAGGGACATGGCCAGCAATCATGACTCTAACCGAAAGACGCG                         GATAATTGGCCGTCTGTGATGTTTGCAATGGCTGGAGGAATATTTCTTAGC
genomic: GCTCTTCTTAGGGACATGGCCAGCAATCATGACTCTAACCGAAAGACGCGgtagacttcc ... tttgtcacagGATAATTGGCCGTCTGTGATGTTTGCAATGGCTGGAGGAATATTTCTTAGC
EST: gi|116437711|gb|EG480303.1|EG480303
EST:     GCTCTTCTTAGGGACATGGCCAGCAATCATGACTCTAACCGAAAGACGCG                         GATAATTGGCCGTCTGTGATGTTTGCAATGGCTGGAGGAATATTTCTTAGC
genomic: GCTCTTCTTAGGGACATGGCCAGCAATCATGACTCTAACCGAAAGACGCGgtagacttcc ... tttgtcacagGATAATTGGCCGTCTGTGATGTTTGCAATGGCTGGAGGAATATTTCTTAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattcatacacatatttgttgttggtttttgaaatgcaaagtttttttgtcacagGATAATTGGCCGTCTGTGATGTTTGCAATGGCTGGAGGAATATTTCTTAGCCTTGGGACCTTAGCAACACAATATGCTTGGGCTTTTGTTGGGTTATCTG
                                         tttttttgtc  CT-rich tract
                                     aaagttttttt  TA-rich tract