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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagttacacatacattcatacacatatttgttgttggtttttgaaatgcaaagtttttttgtcacagGATAATTGGCCGTCTGTGATGTTTGCAATGGCTGGAGGAATATTTCTTAGCCTTGGGACCTTAGCAACACAATATGCTTGGGCTTTTGTTGGGTTATCTG

Basic information

species Arabidopsis thaliana
transcript AT2G03600.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G03600.4 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA02G12980.1 (Glycine max), 3'ss of exon 1
-------------------------gtcagttacacatac-attcatacacatatttgtt----gttggtttttgaaatgcaaagtt--tttttgtcacagGATAATTGGCCGTCTGTGATGTTTGCAATGGCTGGAGGAATATTTCTTAGCCTTGGGACCTTAGCAACACAATATGCTTGGGCTTTTGTTGGGTTATCTG
                          | |  |  | ||   |||  |    ||  |||||      |||||| |||| ||     ||  | ||||   |||||||| ||||| |||||  ||||||| ||||  || ||| |  | |||||  |||| |  ||  |||||||||||||||||||||||||||| ||||| |
gttgaatagcagcatattttcagccttgaactttatattttatttgtgactattcttgtttaagagtggtttatgaa-tgtggtattgatatttgatgcagGATAACTGGCCTTCTGTTCTGTTTGCCATGGGGGGTGGAGTGGTCCTTAGTGTTGGAAATTTGTCAACACAATATGCTTGGGCTTTTGTTGGTTTATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116437781|gb|EG480373.1|EG480373
EST:     TAGGCGAAATAAGTCCAAGCAGACCAAATTTCACCACACAGCTTTCTCAA                         GATAATTGGCCGTCTGTGATGTTTGCAATGGCTGGAGGAATGTTTCTTAGC
genomic: TAGGCGAAATAAGTCCAAGCAGACCAAATTTCACCACACAGCTTTCTCAAgtcagttaca ... tttgtcacagGATAATTGGCCGTCTGTGATGTTTGCAATGGCTGGAGGAATATTTCTTAGC
EST: gi|116437675|gb|EG480267.1|EG480267
EST:     ATTTCACCACACAGCTTTCTCAA                         GATAATTGGCCGTCTGTGATGTTTGCAATGGCTGGAGGAATATTTCTTACC
genomic: ATTTCACCACACAGCTTTCTCAAgtcagttaca ... tttgtcacagGATAATTGGCCGTCTGTGATGTTTGCAATGGCTGGAGGAATATTTCTTAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattcatacacatatttgttgttggtttttgaaatgcaaagtttttttgtcacagGATAATTGGCCGTCTGTGATGTTTGCAATGGCTGGAGGAATATTTCTTAGCCTTGGGACCTTAGCAACACAATATGCTTGGGCTTTTGTTGGGTTATCTG
                                         tttttttgtc  CT-rich tract
                                     aaagttttttt  TA-rich tract