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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacttaaatcacttttggagatacatgcaaagagaaagttataatttgttgttgagaaaccacttattttgtagGATAATTGGCCGTCTGTTATGTTTGCAATGGCGGGCGGTATCGTGCTTAGCCTCGGGAATCTATCAACTCAATATGCATGGGCTTTAGTAGGCTTATCAG

Basic information

species Arabidopsis thaliana
transcript AT2G03530.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86061721|gb|DR357478.1|DR357478
EST:     TTGGGTCTACAAAACCCGATAGCCCAAACTTCATCACTCAGCTTGCTCAA                         GATAATTGGCCGTCTGTTATGTTTGCAATGGCGGGCGGTATCGTGCTTAGC
genomic: TTGGGTCTACAAAACCCGATAGCCCAAACTTCATCACTCAGCTTGCTCAAgtatacttaa ... tattttgtagGATAATTGGCCGTCTGTTATGTTTGCAATGGCGGGCGGTATCGTGCTTAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatacatgcaaagagaaagttataatttgttgttgagaaaccacttattttgtagGATAATTGGCCGTCTGTTATGTTTGCAATGGCGGGCGGTATCGTGCTTAGCCTCGGGAATCTATCAACTCAATATGCATGGGCTTTAGTAGGCTTATCAG
                                           cttatttt  CT-rich tract
               aaagttataatttgtt  TA-rich tract