Sequence
atgc intronic sequence ATGC exonic sequencegtttagttgtttttttttccctttcagatttatgcttgagtcaaaagctatcctgcaacagacgatgagtgtttgtatgttcttttagGTGACATTTGTGTCTAGTGAGCCAATGCCTCCTGAGTTCTCACGTACAATATCATTTGGAAATGTCACATACAATCTCTACAGTCACAGCTTCCTTCATT
Basic information
species | Arabidopsis thaliana |
transcript | AT2G02970.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G02970.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv01s0026g02490.t01 (Vitis vinifera), 3'ss of exon 2
----------gtttagttgtttttttttccctt-tcagatttatgcttgagtcaaaagctatcctgcaaca--gacgatgagtgtttgtatgttcttttagGTGACATTTGTGTCTAGTGAGCCAATGCCTCCTGAGTTCTCACGTACAATATCATTTGGAAATGTCACATACAATCTCTACAGTCACAGCTTCCTTCATT
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ttttgtccaaaatgagttaagaattttacatggatcataattaagaa-gcatcagttgtgggattgtcattttgatggtcagtattctcttcatttttcagGTAACCTTTGTTTCAAGTGAACCAGTGCCTCCTGAATTCTCACATACTCTTAGATTTGGGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164146007|gb|ES196498.1|ES196498EST: ATCCTCTTAAAACAACCGGAATTGTTGAACTTGGCGGGGCTTCTGCTCAG GTGACATTTGTG
genomic: ATCCTCTTAAAACAACCGGAATTGTTGAACTTGGCGGGGCTTCTGCTCAGgtttagttgt ... gttcttttagGTGACATTTGTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcttgagtcaaaagctatcctgcaacagacgatgagtgtttgtatgttcttttagGTGACATTTGTGTCTAGTGAGCCAATGCCTCCTGAGTTCTCACGTACAATATCATTTGGAAATGTCACATACAATCTCTACAGTCACAGCTTCCTTCATT
tgttctttt CT-rich tract
ttctttta TA-rich tract