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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtacattatttttttattgtgttatggagttacagtctgctacaatagattttgatattgacattgttctcgtaactttgcagAACCAATCCATGCTTACCAGACATGCCTATCATTTATGCGAGTGATGCCTTTTTGACACTGACCG

Basic information

species Arabidopsis thaliana
transcript AT2G02710.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G02710.3 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA01G04920.1 (Glycine max), 3'ss of exon 2
----------gtgagtacattatttttttattgtgtt---atggagttacagtctgctacaatag--attttgatattgacattgttctc-gtaactttgcagAACCAATCCATGCTTACCAGACATGCCTATCATTTATGCGAGTGATGCCTTTTTGACACTGACCG
          |  | |   |  |||| |||||   ||   |     |||   | | |    |     | |||| |  |   ||  || |  ||  | ||||||||| |||||  | ||| |||||||||||||  ||||||| ||||||||||| |||| | |||| |
gtgagttgttggaaatgtctagttttgttattacttttccacaagcttatgctttccgcagacccttaatttgttgcttgtatgattttgagtttccttgcagAACTAATCCGCGTTTATCAGACATGCCTATTGTTTATGCTAGTGATGCCTTCTTGAAATTGACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124851411|gb|EH935848.1|EH935848
EST:     AGCTCGTCGTTAGTTATTTCTCTCGGTAGAATCAAACAAAGTTTCGTATT                         AACCAATCCATGCTTACCAG
genomic: AGCTCGTCGTTAGTTATTTCTCTCGGTAGAATCAAACAAAGTTTCGTATTgtgagtacat ... aactttgcagAACCAATCCATGCTTACCAG
EST: gi|116453954|gb|EG496546.1|EG496546
EST:     AGCTCGTCGTTAGTTATTTCTCTCGGTAGAATCAAACAAAGTTTCGTATT                         AACCAATCCATGCTTACCAGACATGCCTATCATTTATGCGAGTGATGCCTT
genomic: AGCTCGTCGTTAGTTATTTCTCTCGGTAGAATCAAACAAAGTTTCGTATTgtgagtacat ... aactttgcagAACCAATCCATGCTTACCAGACATGCCTATCATTTATGCGAGTGATGCCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttacagtctgctacaatagattttgatattgacattgttctcgtaactttgcagAACCAATCCATGCTTACCAGACATGCCTATCATTTATGCGAGTGATGCCTTTTTGACACTGACCG
                                         tcgtaac  putative branch site (score: 2)
               aatagattttgatatt  TA-rich tract