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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttttctagttctttctgtaactgtgcactgaaaaaaagtaaaatttattaaagttaaaaatgtggcattatgtgtttgttcagGTTGGTGTTGTTTCAGATGAAAAATTGTTGGAACTCTTGGAATTAGCATTGTCTTCTGACACAGCAGAGACTGTTAAGCGAGCTAGAGAGTTGTTGGACC

Basic information

species Arabidopsis thaliana
transcript AT2G02480.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G02480.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA17G00620.1 (Glycine max), 3'ss of exon 3
----------gta-agtttttctagttctttctgtaactgtgcactgaaaaaaagtaaaatttattaaagttaaaaatgtggcattatgtgtttgtt-cagGTTGGTGTTGTTTCAGATGAAAAATTGTTGGAACTCTTGGAATTAGCATTGTCTTCTGACACAGCAGAGACTGTTAAGCGAGCTAGAGAGTTGTTGGACC
           || |    ||||| |  |   | ||||  | ||          |   || |  |||   |||||||| ||   ||   |   ||   ||||| || |||||||||||||||||||| |||||||| ||||| |||||| |||| || || || | |||||| || ||  |||| |||||  || ||||| 
ccaaacatgcatataacagttctaataatgcttttaaccttacaaaagttttttggtcaaatggttagc-ttaaaaatatgttttttactacctgcaacagGTGGGAGTTGTTTCAGATGAAAAATTATTGGAACTTTTGGAGTTAGCAATGTCGTCAGATACTGTAGAGACAGTGAAAAGAGCCAGAGAACTGATGGACT

upper sequence: AT2G02480.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA07G40180.1 (Glycine max), 3'ss of exon 3
--------gtaagtttttctagttctttctgtaactgtgcactgaaaaaaagtaaaatttattaaagttaaaaatgtggcattatgtgtttgtt----cagGTTGGTGTTGTTTCAGATGAAAAATTGTTGGAACTCTTGGAATTAGCATTGTCTTCTGACACAGCAGAGACTGTTAAGCGAGCTAGAGAGTTGTTGGACC
           |    |||||    |   | ||||| | ||          |   || |  | |   | |||||  |    || | | ||   |    ||||| || |||||||||||||||||||| |||||||| |||||  ||||| |||| || || || | |||||| || ||  |||| ||||| ||| ||||| 
aacatgcaaataacagttctaaaaatacttttaactttacaaaagtgttttggtcaaatggtcatcat-aaaaacataatgttttttattacctgcaacagGTGGGAGTTGTTTCAGATGAAAAATTATTGGAACTTTTGGAGCTAGCAATGTCATCAGATACTGTAGAGACAGTGAAAAGAGCCAGAGAATTGATGGACT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaaaaaagtaaaatttattaaagttaaaaatgtggcattatgtgtttgttcagGTTGGTGTTGTTTCAGATGAAAAATTGTTGGAACTCTTGGAATTAGCATTGTCTTCTGACACAGCAGAGACTGTTAAGCGAGCTAGAGAGTTGTTGGACC
                                              tttgttc  CT-rich tract
     aaaagtaaaatttatt  TA-rich tract