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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaacatctgaattctctttgggttttactcaatgaaggccaaagtttttgaaatttctgtggtttttgttttcttctcagTTTGTGAGCTCTGCTTTGAAAGAACCAAGTTTGCAGTTTGAGCTTCTGGATCCTGTGCTGGTTAAACGGCGTGTGATTCCACATACTCCAGCCCCGGGAC

Basic information

species Arabidopsis thaliana
transcript AT2G01650.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124815999|gb|EH900865.1|EH900865
EST:     TGCTTCAAGGTGTGTTTGCTCCATGGGAACCTACTTTTGCTCTCTATGAG                         TTTGTGAGCTCTGCTTTGAAAGAACCAAGTTTGCAGTTTGAGCTT
genomic: TGCTTCAAGGTGTGTTTGCTCCATGGGAACCTACTTTTGCTCTCTATGAGgttaacatct ... ttcttctcagTTTGTGAGCTCTGCTTTGAAAGAACCAAGTTTGCAGTTTGAGCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactcaatgaaggccaaagtttttgaaatttctgtggtttttgttttcttctcagTTTGTGAGCTCTGCTTTGAAAGAACCAAGTTTGCAGTTTGAGCTTCTGGATCCTGTGCTGGTTAAACGGCGTGTGATTCCACATACTCCAGCCCCGGGAC
                                     tttttgttttcttctc  CT-rich tract
               aaagtttttgaaattt  TA-rich tract