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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggtttctttgttcccttgttgttttctctagctcttacattttcatctgaagatatattgtgtgtttttctttgaatcttgcttcttatcatattttgttcttgtattatagCTCATGTGTTCCATAGAGATCTGAAGCCTAAGAACATCCTCGCTAATGCTGATTGCAAAATCAAGATCTGTGATTTAGGACTTGCTCGTGTCTCCTTTAC

Basic information

species Arabidopsis thaliana
transcript AT2G01450.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19875322|gb|AU236153.1|AU236153
EST:     TCAATTCTTCTTGTACCAACTTCTTCGTGGCTTAAAATTCATGCACTCAG                         CTCATGTGTTCCATAGAGATCTGAAGCCTAAGAACATCCTCGCTAATGCTG
genomic: TCAATTCTTCTTGTACCAACTTCTTCGTGGCTTAAAATTCATGCACTCAGgtaaggtttc ... tgtattatagCTCATGTGTTCCATAGAGATCTGAAGCCTAAGAACATCCTCGCTAATGCTG
EST: gi|116408403|gb|EG450995.1|EG450995
EST:     TCAATTCTTCTTGTACCAACTTCTTCGTGGCTTAAAATTCATGCACTCAG                         CTCATGTGTTCCATAGAGATCTGAAGCCTAAGAACATCCTCGCTAATGCTG
genomic: TCAATTCTTCTTGTACCAACTTCTTCGTGGCTTAAAATTCATGCACTCAGgtaaggtttc ... tgtattatagCTCATGTGTTCCATAGAGATCTGAAGCCTAAGAACATCCTCGCTAATGCTG
EST: gi|116408404|gb|EG450996.1|EG450996
EST:     TCAATTCTTCTTGTACCAACTTCTTCGTGGCTTAAAATTCATGCACTCAG                         CTCATGTGTTCCATAGAGATCTGAAGCCTAAGAACATCCTCGCTAATGCTG
genomic: TCAATTCTTCTTGTACCAACTTCTTCGTGGCTTAAAATTCATGCACTCAGgtaaggtttc ... tgtattatagCTCATGTGTTCCATAGAGATCTGAAGCCTAAGAACATCCTCGCTAATGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgtgtttttctttgaatcttgcttcttatcatattttgttcttgtattatagCTCATGTGTTCCATAGAGATCTGAAGCCTAAGAACATCCTCGCTAATGCTGATTGCAAAATCAAGATCTGTGATTTAGGACTTGCTCGTGTCTCCTTTAC
                                    ttttgttctt  CT-rich tract
                                 atattttgttcttgta  TA-rich tract