1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaacatttttatcctccaaatacaaatacttggaaactgtagttgatcttctcttttatccttgatagGAGAAGGAGTTGATCTCGTTGAAACGCGAGGCCAAGCTTAAGGGAGGTTTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGG
species | Arabidopsis thaliana |
transcript | AT2G01250.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCTTATCTTCAAAAGAGCCGAGCAATACTCCAAGGAATATGCCGAGAAG GAGAAGGAGTTGATEST: gi|124716713|gb|EH808115.1|EH808115
genomic: AGCTTATCTTCAAAAGAGCCGAGCAATACTCCAAGGAATATGCCGAGAAGgtaaacattt ... tccttgatagGAGAAGGAGTTGAT
EST: AGCCGAGCAATACTCCAAGGAATATGCCGAGAAG GAGAAGGAGTTGATCTCGTTGAAACGCGAGGCCAAGCTTAAEST: gi|124925967|gb|EL003883.1|EL003883
genomic: AGCCGAGCAATACTCCAAGGAATATGCCGAGAAGgtaaacattt ... tccttgatagGAGAAGGAGTTGATCTCGTTGAAACGCGAGGCCAAGCTTAA
EST: AGCCGAGCAATACTCCAAGGAATATGCCGAGAAG GAGAAGGAGTTGATCTCGTTGAAACGCGAGGCCAAGCTTAAGGGAGGTTTCEST: gi|125066615|gb|EL133428.1|EL133428
genomic: AGCCGAGCAATACTCCAAGGAATATGCCGAGAAGgtaaacattt ... tccttgatagGAGAAGGAGTTGATCTCGTTGAAACGCGAGGCCAAGCTTAAGGGAGGTTTC
EST: AGCTTATCTTCAAAAGAGCCGAGCAATACTCCAAGGAATATGCCGAGAAG GAGAAGGAGTTGATCEST: gi|125136058|gb|EL176088.1|EL176088
genomic: AGCTTATCTTCAAAAGAGCCGAGCAATACTCCAAGGAATATGCCGAGAAGgtaaacattt ... tccttgatagGAGAAGGAGTTGATC
EST: AGCTTATCTTCAAAAGAGCCGAGCAATACTCCAAGGAATATGCCGAGAAG GAGAAGGAGTTGATCTCGTCGAAACGCGAGEST: gi|152034121|gb|BP868106.2|BP868106
genomic: AGCTTATCTTCAAAAGAGCCGAGCAATACTCCAAGGAATATGCCGAGAAGgtaaacattt ... tccttgatagGAGAAGGAGTTGATCTCGTTGAAACGCGAG
EST: AGCTTATCTTCAAAAGAGCCGAGCAATACTCCAAGGAATATGCCGAGAAG GAGAAGGAGTTGATCTCGTTGAAACGCGAGGCCAAGCTTAAGGGAGGTTTCEST: gi|152038370|gb|BP815237.2|BP815237
genomic: AGCTTATCTTCAAAAGAGCCGAGCAATACTCCAAGGAATATGCCGAGAAGgtaaacattt ... tccttgatagGAGAAGGAGTTGATCTCGTTGAAACGCGAGGCCAAGCTTAAGGGAGGTTTC
EST: AGCTTATCTTCAAAAGAGCCGAGCAATACTCCAAGGAATATGCCGAGAAG GAGAAGGAGTTGATCTCGTTGAAACGCGAGGCCAAGCTTAAGGGAGGTTTCEST: gi|164204449|gb|ES026714.1|ES026714
genomic: AGCTTATCTTCAAAAGAGCCGAGCAATACTCCAAGGAATATGCCGAGAAGgtaaacattt ... tccttgatagGAGAAGGAGTTGATCTCGTTGAAACGCGAGGCCAAGCTTAAGGGAGGTTTC
EST: CAATACTCCAAGGAATATGCCGAGAAG GAGAAGGAGTTGATCTCGTTGAAACGCGAGGCCAAGCTTAAGGGAGGTTTCEST: gi|164075113|gb|ES015319.1|ES015319
genomic: CAATACTCCAAGGAATATGCCGAGAAGgtaaacattt ... tccttgatagGAGAAGGAGTTGATCTCGTTGAAACGCGAGGCCAAGCTTAAGGGAGGTTTC
EST: AGCTTATCTTCAAAAGAGCCGAGCAATACTCCAAGGAATATGCCGAGAAG GAGAAGGAGTTGATCTCGTTGAAACGCGAGGCCAAGCTTAAGGGAGG
genomic: AGCTTATCTTCAAAAGAGCCGAGCAATACTCCAAGGAATATGCCGAGAAGgtaaacattt ... tccttgatagGAGAAGGAGTTGATCTCGTTGAAACGCGAGGCCAAGCTTAAGGGAGG
ctccaaatacaaatacttggaaactgtagttgatcttctcttttatccttgatagGAGAAGGAGTTGATCTCGTTGAAACGCGAGGCCAAGCTTAAGGGAGGTTTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGG
agttgat putative branch site (score: 5)
ttgatcttctctttta CT-rich tract
aatacaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacatttttatcctccaaatacaaatacttggaaactgtagttgatcttctcttttatccttgatagGAGAAGGAGTTGATCTCGTTGAAACGCGAGGCCAAGCTTAAGGGAGGTTTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC