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gtcatacaactctgccttttaccctctctctttgttttggggatgttattttggaatgctttatgttgacatcatgttttcttcctgacagGTTAACAATCCAGCAACCGGTGAAATTATAGCTGATGTTGCATGTATGGGAACAAAAGAGACAAATGATGCTATTGCTTCTTCTTATGAAGCATTTACTT
species | Arabidopsis thaliana |
transcript | AT1G79440.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCTAATGGGAGGCAAGTGGCTGGACTCGTATGACAATAAGACAATCAAG GTTAACAATC-AGCAACCGGTGAAATTATAGCTGATGTTGCATGTATGGGAEST: gi|152034090|gb|BP867328.2|BP867328
genomic: GTCTAATTGGAGGCAAGTGGCTTGACTCGTATGACAATAAGACAATCAAGgtcatacaac ... ttcctgacagGTTAACAATCCAGCAACCGGTGAAATTATAGCTGATGTTGCATGTATGGGA
EST: GTCTAATTGGAGGCAAGTGGCTTGACTCGTATGACAATAAGACAATCAAG GTTAACAATCCAGCAACCGGTGAAATTATAGCTGATGTTGCATGTATGGGAEST: gi|301502225|gb|HO207765.1|HO207765
genomic: GTCTAATTGGAGGCAAGTGGCTTGACTCGTATGACAATAAGACAATCAAGgtcatacaac ... ttcctgacagGTTAACAATCCAGCAACCGGTGAAATTATAGCTGATGTTGCATGTATGGGA
EST: GTCTAATTGGAGGCAAGTGGCTTGACTCGTATGACAATAAGACAATCAAG GTTAACAATCCAGCAACCGGTGAAATTATAGCTGATGTTGCATGTATGGGA
genomic: GTCTAATTGGAGGCAAGTGGCTTGACTCGTATGACAATAAGACAATCAAGgtcatacaac ... ttcctgacagGTTAACAATCCAGCAACCGGTGAAATTATAGCTGATGTTGCATGTATGGGA
ttggggatgttattttggaatgctttatgttgacatcatgttttcttcctgacagGTTAACAATCCAGCAACCGGTGAAATTATAGCTGATGTTGCATGTATGGGAACAAAAGAGACAAATGATGCTATTGCTTCTTCTTATGAAGCATTTACTT
tgttgac putative branch site (score: 3)
tcatgttttcttcct CT-rich tract
atgttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcatacaactctgccttttaccctctctctttgttttggggatgttattttggaatgctttatgttgacatcatgttttcttcctgacagGTTAACAATCCAGCAACCGGTGAAATTATAGCTGATGTTGCATGTATGGGAACAAAAGAGACAAATGATGCTATTGCTTCTTCTTATGAAGCATTTACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC