1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacttgcaccgtttcgaaattcatgaaatttcactttgattttgatcaatctggtaatagtatttgtttcaattttggtttaatgtgtttgtagCCATCGGATGGGATTAGCAAAGTGGTGTTTGGTGGTCAAGTCACCGATGAAGAAGTTGAGAGCTTGAACCGCAG
species | Arabidopsis thaliana |
transcript | AT1G78150.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCCTTCCTCCGCTTCTCGCTCCGCCGTTACGTTCCCACCAG CCATCGGATGGGATTAGCAAAGTGGTGTTTGGTGGTCAAGTACACCGATGAEST: gi|116438866|gb|EG481458.1|EG481458
genomic: CTCCTTCCTCCGCTTCTCGCTCCGCCGTT-CGTTCCCACCAGgtacttgcac ... gtgtttgtagCCATCGGATGGGATTAGCAAAGTGGTGTTTGGTGGTCAAGT-CACCGATGA
EST: GCTTCTCGCTCCGCCGTTCGTTCCCACCAG CCATCGGATGGGATTAGCAAAGTGGTGTTTGGTGGTCAAGTCACCGATGAAEST: gi|47831749|gb|CK121433.1|CK121433
genomic: GCTTCTCGCTCCGCCGTTCGTTCCCACCAGgtacttgcac ... gtgtttgtagCCATCGGATGGGATTAGCAAAGTGGTGTTTGGTGGTCAAGTCACCGATGAA
EST: CGCCGGATTCTCCTTCCTCCGCTTCTCGCTCCGCCGTTCGTTCCCACCAG CCATCGGATGGGATTAGCAAAGTGGTGTTTGGTGGTCAAGTCACCGATGAA
genomic: CGCCGGATTCTCCTTCCTCCGCTTCTCGCTCCGCCGTTCGTTCCCACCAGgtacttgcac ... gtgtttgtagCCATCGGATGGGATTAGCAAAGTGGTGTTTGGTGGTCAAGTCACCGATGAA
ttttgatcaatctggtaatagtatttgtttcaattttggtttaatgtgtttgtagCCATCGGATGGGATTAGCAAAGTGGTGTTTGGTGGTCAAGTCACCGATGAAGAAGTTGAGAGCTTGAACCGCAG
gtttaat putative branch site (score: 4)
taatagtatttgtttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttgcaccgtttcgaaattcatgaaatttcactttgattttgatcaatctggtaatagtatttgtttcaattttggtttaatgtgtttgtagCCATCGGATGGGATTAGCAAAGTGGTGTTTGGTGGTCAAGTCACCGATGAAGAAGTTGAGAGCTTGAACCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT