1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacgcttctttattcaattttgtagaatttcataaatatttgttttttttagtgttcgttaaaaccaagatttgggtttttacacttatgtttcttcttctgatttggtcaaatgtagAAAGCTACACAAGAAAAAGATGTAACTGGCGAAGTTTTGAGAACTCATGAAGCTATACA
species | Arabidopsis thaliana |
transcript | AT1G77810.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCGTGATCATGAACTTCAGATTGTATCTGACGATTGTGCTCATAATAAA AAAGCTACACAAGAAAAAGATGTAACTGGCGAAGTTTTGAGAACTCATGAAEST: gi|301502422|gb|HO207962.1|HO207962
genomic: ATCGTGATCATGAACTTCAGATTGTATCTGACGATTGTGCTCATAATAAAgtacgcttct ... tcaaatgtagAAAGCTACACAAGAAAAAGATGTAACTGGCGAAGTTTTGAGAACTCATGAA
EST: ATCGTGATCATGAACTTCAGATTGTATCTGACGATTGTGCTCATAATAAA AAAGCTACACAAGAAAAAGATGTAACTGGCGAAGTTTTGAGAACTCATGAA
genomic: ATCGTGATCATGAACTTCAGATTGTATCTGACGATTGTGCTCATAATAAAgtacgcttct ... tcaaatgtagAAAGCTACACAAGAAAAAGATGTAACTGGCGAAGTTTTGAGAACTCATGAA
accaagatttgggtttttacacttatgtttcttcttctgatttggtcaaatgtagAAAGCTACACAAGAAAAAGATGTAACTGGCGAAGTTTTGAGAACTCATGAAGCTATACA
ttctgat putative branch site (score: 3)
tttttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcttctttattcaattttgtagaatttcataaatatttgttttttttagtgttcgttaaaaccaagatttgggtttttacacttatgtttcttcttctgatttggtcaaatgtagAAAGCTACACAAGAAAAAGATGTAACTGGCGAAGTTTTGAGAACTCATGAAGCTATACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC