1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttttattccacctctaattcttgtgactcgttataattttttatttttttggtggtattattgaattttaactttttgtttttttttgtttgtgtaaaaaagTGGTTTGAGGTGTTAGATGGATTGTTGGGGAAACATTGGAGGAACCTTGGATTGATCTTTAACTGCACTTTTCTTCTCTTTGGATCTGTTATTCAGCTCA
species | Arabidopsis thaliana |
transcript | AT1G77690.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCACGTTATTCAG TGGTTTGAGGTGTTAGATGGATTGTTGGGGAAACATTGGAGGAACCTTGGAEST: gi|116477708|gb|EG520300.1|EG520300
genomic: CCACGTTATTCAGgttttattcc ... tgtaaaaaagTGGTTTGAGGTGTTAGATGGATTGTTGGGGAAACATTGGAGGAACCTTGGA
EST: GAACTCGTAAAGAACGAGAAAAATTCGATTTCCGTAACCACGTTATTCAG TGGTTTGAGGTGTTAGATGGATTGTTGGGGAAACATTGGAGGAACCTTGGAEST: gi|124907442|gb|EH981522.1|EH981522
genomic: GAACTCGTAAAGAACGAGAAAAATTCGATTTCCGTAACCACGTTATTCAGgttttattcc ... tgtaaaaaagTGGTTTGAGGTGTTAGATGGATTGTTGGGGAAACATTGGAGGAACCTTGGA
EST: GAACGAGAAAAATTCGATTTCCGTAACCACGTTATTCAG TGGTTTGAGGTGTTAGATGGATTGTTGGGGAAACATTGGAGGAA
genomic: GAACGAGAAAAATTCGATTTCCGTAACCACGTTATTCAGgttttattcc ... tgtaaaaaagTGGTTTGAGGTGTTAGATGGATTGTTGGGGAAACATTGGAGGAA
tttggtggtattattgaattttaactttttgtttttttttgtttgtgtaaaaaagTGGTTTGAGGTGTTAGATGGATTGTTGGGGAAACATTGGAGGAACCTTGGATTGATCTTTAACTGCACTTTTCTTCTCTTTGGATCTGTTATTCAGCTCA
ttttaac putative branch site (score: 2)
ctttttgttttttttt CT-rich tract
tattattgaattttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttattccacctctaattcttgtgactcgttataattttttatttttttggtggtattattgaattttaactttttgtttttttttgtttgtgtaaaaaagTGGTTTGAGGTGTTAGATGGATTGTTGGGGAAACATTGGAGGAACCTTGGATTGATCTTTAACTGCACTTTTCTTCTCTTTGGATCTGTTATTCAGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA