1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagctctcgtatatgtttactcctttcctcagagaattttaggtgaattacaaaatttagggctccgtttttttttgttttgtctttggtactgaagGTACCAGCGACTCGTATTTCGTCATAAGTTATATCAGCTTAGGGAAGAAAGAGACATGAAGCCTGAAACTTTCGCTAGTCTTGTATCGGCTATTCTTTAT
species | Arabidopsis thaliana |
transcript | AT1G77440.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATCATCTCTTCATC-GACTTTCCGGTCTCGCCACCGATGTCCAGACATT GTACCAGCGACTCGTATTTCGTCATAAGTTATATCAGCTTAGGGAAGAAAGEST: gi|124910680|gb|EH984760.1|EH984760
genomic: GATCATCTCTTCATCGGACTTTCCGGTCTCGCCACCGATGTCCAGACATTgtaagctctc ... ggtactgaagGTACCAGCGACTCGTATTTCGTCATAAGTTATATCAGCTTAGGGAAGAAAG
EST: GATCATCTCTTCATCGGACTTTCCGGTCTCGCCACCGATGTCCAGACATT GTACCAGCGACTCGTATTTCGTCATAAGTTEST: gi|116388094|gb|EG430686.1|EG430686
genomic: GATCATCTCTTCATCGGACTTTCCGGTCTCGCCACCGATGTCCAGACATTgtaagctctc ... ggtactgaagGTACCAGCGACTCGTATTTCGTCATAAGTT
EST: GATCATCTCTTCATCGGACTTTCCGGTCTCGCCACCGATGTCCAGACATT GTACCAGCGACTCGTATTTCGTCATAAGTTATATCAGCTTAGGGAAGAAAGEST: gi|124759998|gb|EH850128.1|EH850128
genomic: GATCATCTCTTCATCGGACTTTCCGGTCTCGCCACCGATGTCCAGACATTgtaagctctc ... ggtactgaagGTACCAGCGACTCGTATTTCGTCATAAGTTATATCAGCTTAGGGAAGAAAG
EST: GATCATCTCTTCATCGGACTTTCCGGTCTCGCCACCGATGTCCAGACATT GTACCAGCGACTCGTATTTCG
genomic: GATCATCTCTTCATCGGACTTTCCGGTCTCGCCACCGATGTCCAGACATTgtaagctctc ... ggtactgaagGTACCAGCGACTCGTATTTCG
gtgaattacaaaatttagggctccgtttttttttgttttgtctttggtactgaagGTACCAGCGACTCGTATTTCGTCATAAGTTATATCAGCTTAGGGAAGAAAGAGACATGAAGCCTGAAACTTTCGCTAGTCTTGTATCGGCTATTCTTTAT
tttttttttgttttgt CT-rich tract
tttttttttgttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctctcgtatatgtttactcctttcctcagagaattttaggtgaattacaaaatttagggctccgtttttttttgttttgtctttggtactgaagGTACCAGCGACTCGTATTTCGTCATAAGTTATATCAGCTTAGGGAAGAAAGAGACATGAAGCCTGAAACTTTCGCTAGTCTTGTATCGGCTATTCTTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC