1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cattgtcacagttttttttatgaagttctcttttcttctgatgatgttagtaagtttagtcttgaattcggattttagacattgtgttgtgtaaatgtagGTGAAAAGAAGCTGTTGACTCCTCAACCGAGGCTAAGAACAGGATTCTTCTCTGTACTAGAATCTGATTTGTTGAAACCCGAAACGATCATGGAGGCTTG
species | Arabidopsis thaliana |
transcript | AT1G76730.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTAATCCCGATTCGCCCTCAAAAGCAAATCAGGTTTCTTACACTTTCTG GTGAAAAGAAGCTGTTGACTNCTNAACCGAGGCTAAGAACAGGATTCTTNTEST: gi|125032523|gb|EL104792.1|EL104792
genomic: GTTAATCCCGATTCGCC-TCAAAAGCAAATCAGGTTTCTTACACTTTCTGgttagttaat ... gtaaatgtagGTGAAAAGAAGCTGTTGACTCCTCAACCGAGGCTAAGAACAGGATTCTTCT
EST: GGTTAATCCCGATTCGCCTCAAAAGCAAATCAGGTTTCTTACACTTTCTG GTGAAAAGAAGCTGTTGACTCCTCAACCG
genomic: GGTTAATCCCGATTCGCCTCAAAAGCAAATCAGGTTTCTTACACTTTCTGgttagttaat ... gtaaatgtagGTGAAAAGAAGCTGTTGACTCCTCAACCG
gttagtaagtttagtcttgaattcggattttagacattgtgttgtgtaaatgtagGTGAAAAGAAGCTGTTGACTCCTCAACCGAGGCTAAGAACAGGATTCTTCTCTGTACTAGAATCTGATTTGTTGAAACCCGAAACGATCATGGAGGCTTG
taagttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattgtcacagttttttttatgaagttctcttttcttctgatgatgttagtaagtttagtcttgaattcggattttagacattgtgttgtgtaaatgtagGTGAAAAGAAGCTGTTGACTCCTCAACCGAGGCTAAGAACAGGATTCTTCTCTGTACTAGAATCTGATTTGTTGAAACCCGAAACGATCATGGAGGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG