ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
PPT, BS, UA-tract
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

...acaggcgttgcacctgatgctttgttttcttttacatcaactatatgtgacagcatcattcagaactctgttttgttaatctcaatgtcttattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGAAGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTC

Basic information

species	Arabidopsis thaliana
transcript	AT1G75630.1
intron #	2
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: AT1G75630.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: LOC_Os02g34510.1 (Oryza sativa), 3'ss of exon 1

acaggcgttgcacctgatgc--tttgttttcttttacatcaactat-atgtgacagcatcattcagaactctgttttgttaatctcaatgtcttattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGAAGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTC
     | |  ||| |  |||   ||| ||      |||  || | | || |    || |   |  |  | ||||| |   |   || |  | ||  | | ||| || ||||| ||||| || || ||||||||||| ||||| || || || ||||||||||||||||||||||| |||||||||||||||||||||||| | 
-atttcatgacactttgtgcagcttgattggaaccacaggaattttgatttttatgctttgcttggtgcgctgttctaacataatctac-ttttgctct-cagGGCAAATGCTCAACAGCCAAAACTGTTTGTGGGTATGATCCTCATCCTTATCTTTGCGGAAGCGCTTGCACTCTATGGTCTCATTGTTGGTATCATCTTG

upper sequence: AT1G75630.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 2

acaggcgttgcacctgatgctttgttttcttttacatcaac-tatatgtgacagcatcatt--cagaactctgttttgttaatctcaatgtcttattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGAAGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTC
       | |||  |   | ||  || | | |   |  |   ||  |    ||   |  ||  ||| |   ||   | |   |||   |  | |  | ||||| || |||||||| || || ||| |||| ||||| ||||| || || || |||||||| ||||| ||||| |||||||| || ||||||||||||||||||
---aaaatagcagatagagtttctttctatctgttactattgtaagtaaagcactcttgtttgcaggaaattgacatttggttctggtttacctcctctgcagGGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTATCTTTGCAGAAGCTCTTGCTCTGTATGGCCTGATTGTTGGTATCATCCTC

upper sequence: AT1G75630.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: LOC_Os11g06890.1 (Oryza sativa), 3'ss of exon 2

-acaggcgttgcacctgatgctttgttttcttttacatcaactatatgtga-cagcatcattcagaactctgttttgttaatctcaatgtcttattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGAAGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTC
    || |||       |  |||||| ||            |||    | | | || |  ||  ||   |  || || || ||||  |||     || |||| || ||||| || ||||| ||||| || ||||| ||||| || || ||||| || || ||||||||||| ||||||||||||||||| || |||||||||
cctcggtgttcatgactaccctttgtgttgagagcttgaggctactcctaagctgcctactttggattacaattctgata-tctct-tgttggtgttggcagGGCAAATGCACAGCAACCAAAGCTTTTCGTGGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCCCTGTATGGTCTCATTGTGGGCATCATCCTC

upper sequence: AT1G75630.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: AC216067.3_FGT002 (Zea mays), 3'ss of exon 2

acaggcgttgcacctgatgctttgttttcttttacatcaactatatgtgacagcat--cattcagaactctgttttgttaatctcaatgtcttattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGAAGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTC
  |  |      | |   || || | ||||||||      |  ||  ||      |   | |   || | | ||   ||| | ||   | |     || ||| |||||||| ||||| |||||||| |||||||| ||||| || || ||||| || || ||||||||||| ||||| |||||||||||||| || ||||| 
-taatctcctttctttgagcgtt-tcttcttttaaggaggcagtacatgcttatttgggaattgaaattttattgacttattttctgggccactgatttcagGGCGAATGCACAACAGCCGAAGCTTTTTGTGGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTGTACGGTCTCATTGTTGGAATTATCCTT

upper sequence: AT1G75630.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM5G893252_T01 (Zea mays), 3'ss of exon 2

acaggcgttgcacctgatgctttgttttcttttacatcaactatatgtgacagcatcattcagaactctgttttgt-taatctcaatgtct-tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGAAGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTC
        | || |  |   ||||     |    |   || |||||    |  | |  |  | |  ||  | || | ||||    || | | |  | | ||| |||||||| || || || ||| |||||||||| ||||||||||| || ||||| || ||||| ||||| ||||| |||||||| || |||||||| |||
-tctcttatacagccaaatttttgcaccttaaacctcaaattatatccagcc-cgttgtcaacatgtcattcttatctaattctgatttatgtcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTATCTTCGCAGAAGCTCTTGCTCTGTACGGTCTCATCGTCGGTATCATTCTC

upper sequence: AT1G75630.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM2G028432_T01 (Zea mays), 3'ss of exon 1

-------acaggcgttgcacctg---atgctttgttttcttttacatcaactatatgtgacagcatcattcagaactctgttttgttaatctcaatgtcttattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGAAGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTC
       |||   ||   || ||   |       || ||           ||   |  ||| ||  |||      |    |  ||  | |     |||  | ||  |||| ||||| || || || || |||||||||||||| ||||| || || |||||||| || |||||||| || || || |||||||| || || |||||||||
cacttaaacacttgtcctacttgggaaaatcggattgtcaaccgggctggctgccta-gacggcgacatct----cctcatcctgacact-----tgttcttttgcgcagGGCGAACGCTCAGCAGCCAAAGCTGTTTGTGGGCATGATCCTCATCCTCATCTTCGCTGAAGCGCTCGCCCTATACGGTCTCATCGTCGGCATCATCCTC

upper sequence: AT1G75630.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2

acaggcgttgcacctgatgctttgtttt----cttttacatcaactatatgtgacagcatcattcagaactctgttttgttaatctcaatgtcttattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGAAGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTC
    |     ||| ||   |||| |  |     || | | |  || | | | | ||     ||| | |  |  ||||   |||| |    | |     || ||| || ||||||||||| || ||||| || || || ||||| || || ||||| || || ||||||||||| || |||||||| |||||||| || ||||| 
---agtagctcacatgcaactttctcctggcgtttcttcttttac-agaggaggcatgggaattgaaattttagtttgactaatttttgggccaccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT

upper sequence: AT1G75630.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA11G07980.1 (Glycine max), 3'ss of exon 1

acaggcgttgc--acctgatgctttgttttcttttac--atcaactatatgtgacagcatcattcagaactctgttttgttaatctcaatgtcttattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGAAGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTC
  | || |||   |||    | ||  |   || ||||      | | | | | ||  | |  || ||   |    ||||  |  || ||  | || ||||| ||||| ||||| ||||| || ||||| ||||| || |||||||| |||||||||||||| || ||| | ||| ||||||| ||||||||||| |||||||||
--acgctttgttaaccaagagattgttcaactcttactggatgattgtgtctaacttc-tattttagttattgaatttgacatgctgaaaatgtt-ttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCATCTTTGCTGAGGCGTTGGCATTGTATGGACTCATTGTTGGCATCATCCTC

upper sequence: AT1G75630.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA01G37320.1 (Glycine max), 3'ss of exon 1

acaggcgttgcacctgatgctttgtttt-cttttac--atcaactatatgtga---cagcatcattcag-aactctgttttgttaatctcaatgtcttattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGAAGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTC
       ||  | ||||    ||| |   || ||||     || | | | | |   |    | | | |   | | ||   || | |  |     | || ||||| ||||| ||||| ||||| || ||||| ||||| || |||||||| |||||||||||||| || ||| | ||| ||||||| ||||||||||| |||||||||
------tttttaactgagagattgctcaactcttactggataaatgtgtttaatctcgattttagttattgaatatgacctgctgaaattggactgtt-ttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCATCTTTGCTGAGGCGTTGGCATTGTATGGACTCATTGTTGGCATCATCCTC

upper sequence: AT1G75630.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 2

acaggcgttgcacctgatgct-ttgttttcttttacatcaactatatgtgacagcatcattcagaactctgttttgtta-atctcaatgtcttattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGAAGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTC
|      ||        | || ||| ||     |  |  ||   ||  | | ||| |||||  ||    |    | | | ||  |  |  ||  ||||||||||| ||||| || || || ||||| ||||| |||||||| || || ||||| ||||| || ||| | ||| | || |||||||||||||| |||||||||
atgcatttttagttcactcctgttgattatgaatttactaatagtaattta-agcttcattttgacgaattgaatatgacatgccggtaactc-ttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCATTTTTGCTGAGGCGTTGGCATTATACGGTCTCATTGTTGGCATCATCCTC

upper sequence: AT1G75630.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA02G05630.1 (Glycine max), 3'ss of exon 2

acag-gcgttgcacctgatgctttgttttcttttacatcaactatatgtgacagcatcattcagaactctgttttgttaatctcaatgtcttattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGAAGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTC
||     ||||   |       ||| ||     |  |  ||   ||| | | ||| | |||   |    |    | | | |  |       | ||||||||||| ||||| || || || || || ||||| ||||||||||| || ||||| ||||| || ||  | ||| | ||||||||||| ||||| |||||||||
acgtcatgttggttcactcctgttgattatgaatttactaatggtatttta-agcttaattttaacaaattgaatatgacttgccggtaactcttttgcagAGCAAATGCTCAGCAGCCTAAACTTTTTGTTGGAATGATTCTCATCCTCATTTTTGCTGAGGCATTGGCATTATATGGTCTCATCGTTGGCATCATCCTC

upper sequence: AT1G75630.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: PP1S45_100V6.1 (Physcomitrella patens), 3'ss of exon 2

----------------------------------------------------------------------------------------acaggcgttgcacc-tgatgctttgttttcttttacatcaactatatgtgacagcatcattcagaactctgtt-------ttgttaatctcaa---tgtcttattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGAAGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTC
                                                                                         |||  | | |||  |||||          ||    ||  |   |  || |  | |   ||  |     |||        |||||||  |  |   || | |  ||||||| |||||||| || || ||||||||||| ||||| ||||| ||||| ||||| || || || ||||||||  ||||||| || || || || || ||| | 
gtagcggacgaacccttgcaatgtggtgatgtatgggaatacgtagtgaagttggaaagagagatgtaatcgggattgaaatggattcgcagagggttcacggtgatggacatgaggtttgaggatgcagagtgagttatgggagggtttggtgtgttgtggatgtggttgttaacgtggaggatggcatcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCATTTTCGCTGAGGCGCTTGCCTTGTATGGACTGATCGTCGGCATTATCTTG

upper sequence: AT1G75630.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 2

----------------------------------------------------------------------------------------acaggcgttgcacc-tgatgctttgttttcttttacatcaactatatgtgacagcatcattcagaactctgtt-------ttgttaatctcaa---tgtcttattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGAAGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTC
                                                                                         |||  | | |||  |||||          ||    ||  |   |  ||    | |   ||  |     |||        |||||||  |  |   || | |  ||||||| |||||||| || || ||||||||||| ||||| ||||| ||||| ||||| || || || ||||||||  ||||||| || || || || || ||| | 
gtagcggacgaacccttgcaatgtggtgatgtatgggaatacgtagtgaagttggaaagagagatgtaatcgggattgaaatggattcgcagagggttcacggtgatggacatgaggtttgaggatgcagagtgagttgtgggagggtttggtgtgttgtggatgtggttgttaacgtggaggatggcatcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCATTTTCGCTGAGGCGCTTGCCTTGTATGGACTGATCGTCGGCATTATCTTG

upper sequence: AT1G75630.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: PP1S200_79V6.1 (Physcomitrella patens), 3'ss of exon 2

-----------------------------------------------------------------------acaggcgttgcacctg---atgctttgttttcttttacatcaactata-------tgtgacagcatcattca--gaactctgttttgttaatctcaa---tgtcttattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGAAGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTC
                                                                       |   |  ||  |   |   | |||||   ||| |  || | |  | |        || |       ||||    || |      |||||||  |  |   ||   | || ||||| || ||||||||||| || ||||||||||| |||||||| |||||||| || || || || ||||| ||  | || || || || || |||||||| || 
gtacttgacaaagccttgcaatgtggcgatgtaccaaaatacgttttgaagttggagtcaatagtctgccaatctggattcaattcgtagaggctttacgttcatgcacgtgatatctgaggatgctgagttgatgccatttgttgatcatgtccttgttaacttggaggatggggttttgtgcagGGCCAATGCGCAACAGCCCAAGCTGTTTGTAGGAATGATCCTGATTCTGATTTTCGCCGAGGCGCTGGCTTTATACGGACTTATCGTGGGTATCATTCTG

upper sequence: AT1G75630.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 2

acaggcgttgcacctgatgctttgttttcttttacatcaactatatgtgacagcatcattcagaactctgttttgttaatctcaatgtcttattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGAAGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTC
                           |   ||  ||| |  | | |  |     |  |||   |      ||  ||  | |    || ||  ||||||| ||||||||||| ||||| ||||| ||||| |||||||| || |||||||||||||| || ||  | || || || ||||||||||| || |||||||| 
--------------------------gtaagttcgatcgatcaaaagccatctttttcttcgatatctccattgattggttt----gtttttctttgcagGGCGAATGCGCAGCAACCCAAGCTTTTTGTTGGAATGATCCTCATTCTCATCTTTGCCGAGGCTTTGGCTCTATACGGTCTCATTGTGGGAATCATCCTG

upper sequence: AT1G75630.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 2

acaggcgttgcacctgatgctttgttttcttttacatcaactatatgtgacagcatcattcagaactctgttttgttaatctcaatgtcttattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGAAGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTC
                           |   ||  ||| |  | |    |     |  |||   |      ||  ||  | |    || ||  ||||||| ||||||||||| ||||| ||||| ||||| |||||||| ||||||||||||||||| || ||  | || || || ||||||||||| || |||||||| 
--------------------------gtaagttcgatcgatcaaaaaccatctttttcttcgatatctccattgattggttt----gtttttctttgcagGGCGAATGCGCAGCAACCCAAGCTTTTTGTTGGAATGATCCTGATTCTCATCTTTGCCGAGGCTTTGGCTCTATACGGTCTCATTGTGGGAATCATCCTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|125124092|gb|EL170245.1|EL170245

EST:     GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAA
genomic: GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAA

EST: gi|124952800|gb|EL028042.1|EL028042

EST:     GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAA
genomic: GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAA

EST: gi|124908251|gb|EH982331.1|EH982331

EST:     GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAACCGAAGCTGTTTGTGGG
genomic: GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGG

EST: gi|124758564|gb|EH848694.1|EH848694

EST:     TGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT
genomic: TGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT

EST: gi|124829583|gb|EH914174.1|EH914174

EST:     GGTGATGCTGGTGTTAG                         AGNGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT
genomic: GGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT

EST: gi|125255941|gb|EL270026.1|EL270026

EST:     GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAACCGAAGCTGTTTGTGGG
genomic: GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGG

EST: gi|124963371|gb|EL037712.1|EL037712

EST:     GATGCTGGTGTTAG                         AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT
genomic: GATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT

EST: gi|124947514|gb|EL023346.1|EL023346

EST:     TATTGGAATCGTCGGTGATGCTGGTG-TAG                         AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT
genomic: TATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT

EST: gi|164174900|gb|ES166605.1|ES166605

EST:     GGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT
genomic: GGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT

EST: gi|125275942|gb|EL290027.1|EL290027

EST:     TGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATAGATTCTGATTCTCA
genomic: TGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAAT-GATTCTGATTCTCA

EST: gi|86079102|gb|DR374859.1|DR374859

EST:     GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT
genomic: GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT

EST: gi|124822692|gb|EH907558.1|EH907558

EST:     GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAACC
genomic: GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACC

EST: gi|125197466|gb|EL212420.1|EL212420

EST:     TCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATT
genomic: TCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATT

EST: gi|125025145|gb|EL097414.1|EL097414

EST:     GTCTCTTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAA
genomic: GTCTC-TCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAA

EST: gi|124778068|gb|EH868011.1|EH868011

EST:     GTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATT
genomic: GTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATT

EST: gi|164111938|gb|ES183079.1|ES183079

EST:     TTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT
genomic: TTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT

EST: gi|124825603|gb|EH910469.1|EH910469

EST:     CTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCT
genomic: CTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCT

EST: gi|116455931|gb|EG498523.1|EG498523

EST:     GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AACGAATGCGCA
genomic: GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCA

EST: gi|124996126|gb|EL068395.1|EL068395

EST:     CGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT
genomic: CGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT

EST: gi|125284283|gb|EL298368.1|EL298368

EST:     GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAACCGAAG
genomic: GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAG

EST: gi|125281999|gb|EL296084.1|EL296084

EST:     GGTCTCTCTGCTGGTACGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAA
genomic: GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAA

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

tgtgacagcatcattcagaactctgttttgttaatctcaatgtcttattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGAAGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTC

                            tgttaat  putative branch site (score: 3)
                                          tcttatttt  putative PPT
                         ttttgttaat  TA-rich tract

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns