Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatggactgatcattgtctagagctgtctggtttttatcattgcttgtttagccgtgtttgactttgatgtaccactccatgttttagTACTCTGTGTTTGGTTCTCTTTCCAATGTGGGTGCTATGGTTGGTGCAATTGCCAGTGGTCAGATTGCAGAATACATTGGACGAAAAGGG

Basic information

species Arabidopsis thaliana
transcript AT1G75220.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G75220.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: LOC_Os05g49270.1 (Oryza sativa), 3'ss of exon 1
gtaatggactgatcattgtctagagctgtctggtttttatcattgcttgtttagccgtgttt---------gactttgatgtaccactccatgttttagTACTCTGTGTTTGGTTCTCTTTCCAATGTGGGTGCTATGGTTGGTGCAATTGCCAGTGGTCAGATTGCAGAATACATTGGACGAAAAGGG
||    | | | |  || |       | |  |||| ||  |||| |        || | |||         || | |||   ||       || |  ||| ||| ||||| || || || ||||| || || || |||||||| || ||||||||||||||||| || || |||||||| || ||||||
gttgctgcccgcttcttcttcttc-ttcttcggttcttcccattacccccccccccctttttttttgtcccgaatctgaacgacgcgctgctgctgcagTTCTCGGTGTTCGGATCGCTGTCCAACGTCGGCGCCATGGTTGGGGCGATTGCCAGTGGTCAGATGGCCGAGTACATTGGGCGCAAAGGG

upper sequence: AT1G75220.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA14G08070.1 (Glycine max), 3'ss of exon 2
----------gtaatggactgatcattgtctagagctgtctggttt--ttatcattgcttgtttagccgtgtttgactttgatgtaccactccatgttttagTACTCTGTGTTTGGTTCTCTTTCCAATGTGGGTGCTATGGTTGGTGCAATTGCCAGTGGTCAGATTGCAGAATACATTGGACGAAAAGGG
           | ||| | |||  ||    | |   ||  | |||   || |  || |||||||     ||||| ||       |   |||   |  |  |||  ||| ||||||||||| | |||||||||||||| |||||||| ||||| ||||||||||||||||| || ||||| || || ||||||
gtatgtttgaatcatgaa-tgagaatgagtttgtattgatttgttacattttggttccttgtttt-ttatgtttcacaacttcattgtactttgttgtgcagTTTTCTTTGTTTGGTTCTTTGTCCAATGTGGGTGCCATGGTTGGAGCAATAGCCAGTGGTCAGATTGCCGAGTACATAGGGCGCAAAGGG

upper sequence: AT1G75220.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA17G36950.1 (Glycine max), 3'ss of exon 2
--gtaatggactgatcat---tgtctagagctgt-ctggtttttatcatt---gcttgtt--tagccgtgtttgactttgatgtaccactccatgttttagTACTCTGTGTTTGGTTCTCTTTCCAATGTGGGTGCTATGGTTGGTGCAATTGCCAGTGGTCAGATTGCAGAATACATTGGACGAAAAGGG
    | | |||  | | |   |  ||     |||  || ||| | |||||   | || ||  |    |||||| ||       |   |||   |  |  |||  ||| ||||||||||| | |||||||||||||| |||||||| |||||||| |||||||||||||| || ||||| || || ||||| 
caccattagaccaaccttatatcactgagtttgtgttgatttgtttcattttggtttcttgttttttgtgtttcacaacttcattgtactttgttgtgcaGTTTTCTTTGTTTGGTTCTTTGTCCAATGTGGGTGCCATGGTTGGAGCAATTGCTAGTGGTCAGATTGCTGAGTACATAGGGCGCAAAGG-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatcattgcttgtttagccgtgtttgactttgatgtaccactccatgttttagTACTCTGTGTTTGGTTCTCTTTCCAATGTGGGTGCTATGGTTGGTGCAATTGCCAGTGGTCAGATTGCAGAATACATTGGACGAAAAGGG
                                       ccactcc  CT-rich tract
                                              atgtttta  TA-rich tract