Sequence
atgc intronic sequence ATGC exonic sequence...aattatttatccacaaattgattttaattggtaaagaaagtactttctcaaataatatttgctatatattgaatattctgtttattggttatgtatgcagCCAAGTGTTGATTGCATTGGGGTTAAAGGACGCGACCGGAAAGCTCTACAAATACGACCCATCGACCAAAGTCGTGACTGTACTGATGGAAGGGCTAAGT
Basic information
species | Arabidopsis thaliana |
transcript | AT1G74020.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124750140|gb|EH840270.1|EH840270EST: TGTCGTCTACTTCACTTCCTTCAGCTCACGCTTCTCCCCAAT CCAAGTGTTGATTGCATTGGGGTTAAAGGACGCGACCGGAAAGCTCTACAA
genomic: TGTCGTCTACTTCACTTCCTTCAGCTCACGCTTCTCCCCAATgtaaagtttc ... atgtatgcagCCAAGTGTTGATTGCATTGGGGTTAAAGGACGCGACCGGAAAGCTCTACAA
EST:
gi|124716463|gb|EH807865.1|EH807865EST: CTACTGGTGTCGTCTACTTCACTTCCTTCAGCTCACGCTTCTCCCCAAT CCAAGTGTTGATTGCATTGGGGTTAAAGGACGCGACCGGAAAGCTCTACAA
genomic: CTACTGGTGTCGTCTACTTCACTTCCTTCAGCTCACGCTTCTCCCCAATgtaaagtttc ... atgtatgcagCCAAGTGTTGATTGCATTGGGGTTAAAGGACGCGACCGGAAAGCTCTACAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctcaaataatatttgctatatattgaatattctgtttattggttatgtatgcagCCAAGTGTTGATTGCATTGGGGTTAAAGGACGCGACCGGAAAGCTCTACAAATACGACCCATCGACCAAAGTCGTGACTGTACTGATGGAAGGGCTAAGT
aataatatttgctata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aattatttatccacaaattgattttaattggtaaagaaagtactttctcaaataatatttgctatatattgaatattctgtttattggttatgtatgcagCCAAGTGTTGATTGCATTGGGGTTAAAGGACGCGACCGGAAAGCTCTACAAATACGACCCATCGACCAAAGTCGTGACTGTACTGATGGAAGGGCTAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - ccacaaa
- - - - - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - -aaataat