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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttactcctgaatctacattatctattgaatatcagagtttataattttccaattgtgttcatacatgcttcctgtgacctaatcatacacatcttgttagGTAAATTCATTGTTGGATATATCAGCATTTGTGGGCTAAAGGAGTACTATCTTGGATGTGCATGCAACGAGCTCTTTGCCCCACCTAGTGCCTATTCCTT

Basic information

species Arabidopsis thaliana
transcript AT1G73990.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124996569|gb|EL068838.1|EL068838
EST:     GGGAAAGGTTGAAGAAATTAGAAGGCATATCTTGAATTTTAAGAAATCAG                         GTAAATTCATTGTTGGATATATCAGCATTTGTGGGCTAAAGG
genomic: GGGAAAGGTTGAAGAAATTAGAAGGCATATCTTGAATTTTAAGAAATCAGgttactcctg ... atcttgttagGTAAATTCATTGTTGGATATATCAGCATTTGTGGGCTAAAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttccaattgtgttcatacatgcttcctgtgacctaatcatacacatcttgttagGTAAATTCATTGTTGGATATATCAGCATTTGTGGGCTAAAGGAGTACTATCTTGGATGTGCATGCAACGAGCTCTTTGCCCCACCTAGTGCCTATTCCTT
                               acctaat  putative branch site (score: 3)
                                              tcttgtt  putative PPT
                                  taatcata  TA-rich tract