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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagagtgttgcttttgacttaagtttcatatggagcttgttccaatatgtatttttcttacatatgggtgtttcattgcagATGATGATGATGCAGAATGGTTTTGTGATGGGAGGAGTATTAAGCTCATTCGATCAATTCCGTGACATGAGGCTCAATGTCGATAACATGACATACGAG

Basic information

species Arabidopsis thaliana
transcript AT1G73760.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47831039|gb|CK120723.1|CK120723
EST:     ATAGATATCATCGTCATCTAAGACTGCCTTACCCTGATGGACTCGCTGAG                         ATGATGATGATGC
genomic: ATAGATATCATCGTCATCTAAGACTGCCTTACCCTGATGGACTCGCTGAGgtagagtgtt ... ttcattgcagATGATGATGATGC
EST: gi|86074752|gb|DR370509.1|DR370509
EST:     ATAGATATCATCGTCATCTAAGACTGCCTTACCCTGATGGACTCGCTGAG                         ATGATGATGATGCAGAATGGTTTTGTGATGGGAGGAGTATTAAGCTCATTC
genomic: ATAGATATCATCGTCATCTAAGACTGCCTTACCCTGATGGACTCGCTGAGgtagagtgtt ... ttcattgcagATGATGATGATGCAGAATGGTTTTGTGATGGGAGGAGTATTAAGCTCATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catatggagcttgttccaatatgtatttttcttacatatgggtgtttcattgcagATGATGATGATGCAGAATGGTTTTGTGATGGGAGGAGTATTAAGCTCATTCGATCAATTCCGTGACATGAGGCTCAATGTCGATAACATGACATACGAG
                            ttcttac  putative branch site (score: 2)
                                            tttcatt  putative PPT
                 aatatgtatttttctt  TA-rich tract