1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...accaagattgaactaaaaaaatttcatcatcgtcttaattttttacttttatttatagctgagagtgctgctctcttattacttgtttggcatttatcagGACTGGTTTCGAAGAGGAAAAGAACTTTAACGTGGTTTTAAATTCGGTCATTGCTGGGCGGTACCATGTCACTGAGTACCTTGGATCAGCAGCCTTCAGT
species | Arabidopsis thaliana |
transcript | AT1G73450.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGGAGGAGTTTGAAACCTTTGACCTCAAAATTGTGCATCGAAAAAACAG GACTGGTTTCGAAGAGGAAAAGAACTTTAACGTGGTTTTAAATTCGGTCAT
genomic: GAGGAGGAGTTTGAAACCTTTGACCTCAAAATTGTGCATCGAAAAAACAGgtaagatttc ... catttatcagGACTGGTTTCGAAGAGGAAAAGAACTTTAACGTGGTTTTAAATTCGGTCAT
cttttatttatagctgagagtgctgctctcttattacttgtttggcatttatcagGACTGGTTTCGAAGAGGAAAAGAACTTTAACGTGGTTTTAAATTCGGTCATTGCTGGGCGGTACCATGTCACTGAGTACCTTGGATCAGCAGCCTTCAGT
ttattactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accaagattgaactaaaaaaatttcatcatcgtcttaattttttacttttatttatagctgagagtgctgctctcttattacttgtttggcatttatcagGACTGGTTTCGAAGAGGAAAAGAACTTTAACGTGGTTTTAAATTCGGTCATTGCTGGGCGGTACCATGTCACTGAGTACCTTGGATCAGCAGCCTTCAGT
accaaga
- - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgg