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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttaaattttagtatcttaatatctgaatccctttataacaaccaagaactgacttgtgtaatactttctagTCTCGGCGAGGAAGGAGAGGAAACATTCTACACTAACTATGACGAAGTTTGCGACAGCTTTGATGCAATGGAATTGCAACCAGATCTTCTCAGGGGTATT

Basic information

species Arabidopsis thaliana
transcript AT1G72730.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G72730.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA06G05580.1 (Glycine max), 3'ss of exon 2
-------------------------------------------------------------------------------------------------------------gtgagttaaattttagtatcttaatatctgaatccctttataacaaccaagaactgacttgtg---taatactttct--agTCTCGGCGAGGAA--GGAGAGGAAACATTCTACACTAACTATGACGAAGTTTGCGACAGCTTTGATGCAATGGAATTGCAACCAGATCTTCTCAGGGGTATT---
                                                                                                             || |     |  |  | |   | |||  |  || |||  | || ||  |    || | |  ||   | ||  ||||    | |  | |  ||||  |  | | ||   || |  |||   |||||||||||||| || ||||||||||| |||| ||||||     | ||||| |||||||||   
gtaggtttccccttcccttagatggatgcttaatagagatgccatggcttgagatatgcctttatattataataatatgtattagtgataccatcttattatttcatgtgtaatgcctacctgtgaactgtgatacatccatgcct--agaagaattatatgctcattcttggttttatgttttcatgggaccagACTTGGAACTGATGGGCAAGATTTTTTTACTTCTTATGACGAAGTTTGTGAAAGCTTTGATGCTATGGGATTGCAGGAGAACCTTCTGAGGGGTATTTAT

upper sequence: AT1G72730.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA04G05580.1 (Glycine max), 3'ss of exon 2
-------------------------------------------------------------------------------------------gtgagttaaattttagtatct-----taatatctgaatc--cctttataacaaccaagaactgacttgtg---taatacttt--ctagTCTCGGCGAGGAA--GGAGAGGAAACATTCTACACTAACTATGACGAAGTTTGCGACAGCTTTGATGCAATGGAATTGCAACCAGATCTTCTCAGGGGTATT---
                                                                                            | | || |    || |  ||     | |  | |||  |  || |    | ||  |  | || | |  ||   | ||   ||     | |  | |  ||||  |  | | ||   || |  |||   |||||||||||||| || ||||||||||| |||| ||||||     | ||||| |||||||||   
gtaggtttccccttcccttagatggatgcttagtagagatgctatggcttgagatatggttttatattctgtgtattagttattccaacttattatttcatacctaatgcctacctgtgaattgtgatgcgcccatgcctagaattataagctcattcttggttttatgtgttgatgggaccagACTTGGAACTGATGGGCAAGATTTTTTTACTTCTTATGACGAAGTTTGTGAAAGCTTTGATGCTATGGGATTGCAGGAGAACCTTCTGAGGGGTATTTAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatatctgaatccctttataacaaccaagaactgacttgtgtaatactttctagTCTCGGCGAGGAAGGAGAGGAAACATTCTACACTAACTATGACGAAGTTTGCGACAGCTTTGATGCAATGGAATTGCAACCAGATCTTCTCAGGGGTATT
                              aactgac  putative branch site (score: 2)
                                             tactttct  putative PPT
               tttataacaa  TA-rich tract