Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtgagatgctttagaatccgattatgtcgaaaaactatgaagttgtgttctgtagtgtagttagtgacttttggctggctgttttttttttaaatgttgggtagGTTAAACTATGGTGTGACTGCCCATTCTGGCCAGACGATGGAATGTGTCGTTTGCGTGATTGCAGTGTCTGTGAATGTCCAGAGAATGAGTTTCCAGAAC

Basic information

species Arabidopsis thaliana
transcript AT1G72280.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G72280.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: LOC_Os03g52340.1 (Oryza sativa), 3'ss of exon 2
-----gtcagtgagatgctttagaatccgattatgtcgaaaaactatgaagttgtgttctgtagtgtagttagtgacttttggctggctgttttttttttaaatgttgggtagGTTAAACTATGGTGTGACTGCCCATTCTGGCCAGACGATGGAATGTGTCGTTTGCGTGATTGCAGTGTCTGTGAATGTCCAGAGAATGAGTTTCCAGAAC
      |   |  | |   || |  |  ||||    | |||   |||||  |||       ||    | | |   |  ||    ||  | |||  ||| |   ||||   ||||||||| | |||||||||||||| |||||||| || ||||||||||||||  |  | ||||| ||||||||||| || ||||||||||||||||| || |
gactattttatttgttaactttgtgtatgattgcaccaaaa---tatgacattgaaa---ataa-acactcaaaaaaattcacttgtttatttgctttct---tgtt---tagGTTAAATTGTGGTGTGACTGCCCTTTCTGGCCTGATGATGGAATGTGTCGGCTTAGGGATTGTAGTGTCTGTGAGTGCCCAGAGAATGAGTTTCCTGAGC

upper sequence: AT1G72280.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM2G521844_T01 (Zea mays), 3'ss of exon 2
gtcagtgagatgct-ttagaatccgattatgtcgaaaaactatgaagttgtgttctgtagtgtagttagtgacttttggctggctgttttttttttaaatgttgggtagGTTAAACTATGGTGTGACTGCCCATTCTGGCCAGACGATGGAATGTGTCGTTTGCGTGATTGCAGTGTCTGTGAATGTCCAGAGAATGAGTTTCCAGAAC
     || |||||    | ||| |  | |  |  |||||  |  || || ||   ||    || | |  |   || |   |  |    | ||  ||   | |||   |||||||| | |||||||||||||| || ||||| || |||||||||||     |  | ||||| ||||| ||||| ||  ||||||||||||| || ||||
-----tgtgatgccaccaaaatac--tcacatt-aaaaataaaaaatttctgcagtggccagtggctcatctgttctaagtcacgtgctgttccttgtcttttgta-agGTTAAATTGTGGTGTGACTGCCCTTTTTGGCCCGATGATGGAATGTGCAAGCTTAGAGATTGTAGTGTTTGTGAGTGCTCAGAGAATGAGTTCCCCGAAC

upper sequence: AT1G72280.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM2G108115_T01 (Zea mays), 3'ss of exon 2
--gtcagtgag-atgctttagaatccgattatgtcgaaaaactatgaagttgtgttctgtagtgtagttagtgacttttggctggctgttttttttttaaatgttgggtagGTTAAACTATGGTGTGACTGCCCATTCTGGCCAGACGATGGAATGTGTCGTTTGCGTGATTGCAGTGTCTGTGAATGTCCAGAGAATGAGTTTCCAGAAC
   |  ||||  |||  |   ||   | | || |  ||||    | || ||    | |      | |||  |   || |   | |    || ||  ||   | ||    |||||||| | |||||||||||||| || ||||| || |||||||||||     |  | ||||| ||||| ||||| ||||| ||||||||||| || ||||
ctatatgtgaatatgactaccaaaatgctcatattaaaaa----taaaatt----tttaagcaatggttcatctgttctaagtcgtgtgttgttccttgtctttta---agGTTAAATTGTGGTGTGACTGCCCTTTTTGGCCCGATGATGGAATGTGCAAGCTTAGAGATTGTAGTGTTTGTGAGTGTCCGGAGAATGAGTTCCCTGAAC

upper sequence: AT1G72280.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv19s0027g00090.t01 (Vitis vinifera), 3'ss of exon 2
gtcagtgagatgctttagaatccgattatgtcgaaaaactatgaagttgtgttctgtagtgtagttagtgacttttggctggctgttttttttttaaatgttgggtagGTTAAACTATGGTGTGACTGCCCATTCTGGCCAGACGATGGAATGTGTCGTTTGCGTGATTGCAGTGTCTGTGAATGTCCAGAGAATGAGTTTCCAGAAC
   | | | ||| | |   |||    ||| |        |   | | | | |    |  |   |  |||  |||   ||  | |||| || ||   ||     || ||||||| || |||||| ||||||| || ||||| || ||||| |||||     |||||||||||||||| ||||||||||| || | ||| ||||||||||
-aaattcaaatgttattttatctatatatcttctttgtttggaatgctttatcacttgtttccg--agttccttggagcctgatgttcttgttcctaa-----ggcagGTTAAGCTGTGGTGTAACTGCCCTTTTTGGCCTGATGATGGTATGTGCAAGCTGCGTGATTGCAGTGTTTGTGAATGTCCTGAAAGTGAATTTCCAGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtagtgtagttagtgacttttggctggctgttttttttttaaatgttgggtagGTTAAACTATGGTGTGACTGCCCATTCTGGCCAGACGATGGAATGTGTCGTTTGCGTGATTGCAGTGTCTGTGAATGTCCAGAGAATGAGTTTCCAGAAC
                              tgttttttttttaaat  TA-rich tract