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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttctttagtcttacttctcttcttagaggttgtgtttatatgttttattaacatgtggagttgtgatttccctgcagAATGTTCTTATTACTTCAGCTGGTTCTTGGAAGCTTGCCGGGTTTGGTTTTGCTATTTCAGCAGCACAGGCTGGGAATTTGGATAACATGCAATCGTTCC

Basic information

species Arabidopsis thaliana
transcript AT1G71410.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71410.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM2G061681_T02 (Zea mays), 3'ss of exon 2
-----------------gtttctttagtcttacttctcttcttagaggttgtgtttatatgttttattaacatgtgg----agttgtgatttccctgcagAATGTTCTTATTACTTCAGCTGGTTCTTGGAAGCTTGCCGGGTTTGGTTTTGCTATTTCAGCAGCACAGGCT---GGGAATTTGGATAACATGCAATCGTTCC
                  |   |||  | ||||||   |  |   | |   |  ||   |  |  | ||   |   |    | |  |  ||    || |||  ||  |||| |||||    || |||||||||||||  ||||||||||||||| ||||||  |  || ||    ||   ||||  |      ||    |   
aatctgcagaatacctaatgaatttgatgttacttgcttgttattatgccatcattgagttctacactagtgtactgtattaatcatatttcttttgtagACGGTCTTTATAACTTCTAACGGATCTTGGAAGCTTGGTGGGTTTGGTTTTGCTCTTTCAGTTGATCAAGCCACAGGTGGTTTGACTTCATCACAGCTAT---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagaggttgtgtttatatgttttattaacatgtggagttgtgatttccctgcagAATGTTCTTATTACTTCAGCTGGTTCTTGGAAGCTTGCCGGGTTTGGTTTTGCTATTTCAGCAGCACAGGCTGGGAATTTGGATAACATGCAATCGTTCC
                       tattaac  putative branch site (score: 1)
                                            tttccctgc  putative PPT
       ttgtgtttatatgttt  TA-rich tract