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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaactttgttatgcgtttgcagttatgagcttcattagctgttgagatatgggaagcgtctttggtttcctaactttcacaattacagATTATTTTCACAAATGTTGGAAACCCTCATGCTTTAGGACAGAAACCTCTGACTTTTCCTCGTCAG

Basic information

species Arabidopsis thaliana
transcript AT1G70580.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G70580.4 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA01G03260.3 (Glycine max), 3'ss of exon 2
-----gtaacaactttgttatgcgtttgca--gttatgagcttcattagctgttgagatatgggaagcgtctttggtttcctaactttcacaatta-cagATTATTTTCACAAATGTTGGAAACCCTCATGCTTTAGGACAGAAACCTCTGACTTTTCCTCGTCAG
      |   | |||  | |  | ||| ||   ||   | ||| |   |      |             | |   ||     |  ||  |   ||  |||||||| || || |||||||| ||||| ||||| || ||||||||||| ||||  || |||||||||
agtaaatgtgatcttactaacacttttacacatttgctaactttagaggagccaaattccctactcatatttacagtaattcattttcaattgttggcagATTATATTTACTAATGTTGGCAACCCACATGCATTGGGACAGAAACCACTGAGCTTCCCTCGTCAG

upper sequence: AT1G70580.4 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: PP1S64_220V6.1 (Physcomitrella patens), 3'ss of exon 1
---------gtaacaactttgttatgcgtttgcagttatgagcttcattagctgttgagatatgggaagcgtctttggtttcctaactttcacaatt---acagATTATTTTCACAAATGTTGGAAACCCTCATGCTTTAGGACAGAAACCTCTGACTTTTCCTCGTCAG
         |    ||       ||      |   | ||||| || ||     | ||| || ||   ||    |||  ||     | | ||    |     |||||||| ||||| |||||||| ||||| |||||| | || ||||| || || |||||||||||||||
ctgcgtggtgggggaagaaaagaatagaacggttctcatgagatttatg----gctgaaatttgtagagacgatttcattcttggattgtcttggtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTCACTTTTCCTCGTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attagctgttgagatatgggaagcgtctttggtttcctaactttcacaattacagATTATTTTCACAAATGTTGGAAACCCTCATGCTTTAGGACAGAAACCTCTGACTTTTCCTCGTCAG
                                  tcctaac  putative branch site (score: 1)
                                        ctttcac  CT-rich tract
                                     taacttt  TA-rich tract