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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agaaacataaaaaggtggttttttaaaaagaaattctgaattttttttaaggttgattcatggattttgatgaaatctctctgttcataatttttttcagGAAGAATAGTACTTTGTTCAATCATCTTGCCAAGACTCAGACCCCAAAG

Basic information

species Arabidopsis thaliana
transcript AT1G70410.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125034454|gb|EL106723.1|EL106723
EST:     ATTGAACGAATCAAGACCGGTTTTACTCAATTCAAAACCGAGAAATATTT                         GAAGAATAGTACTTTGTTCAATCATCTTGCCAAG
genomic: ATTGAACGAATCAAGACCGGTTTTACTCAATTCAAAACCGAGAAATATTTgtaagtattt ... tttttttcagGAAGAATAGTACTTTGTTCAATCATCTTGCCAAG
EST: gi|125026115|gb|EL098384.1|EL098384
EST:     GAGAAATATTT                         GAAGAATAGTACTTTGTTCAATCATCTTGCCAAGAACTCAGACCCCAAAG
genomic: GAGAAATATTTgtaagtattt ... tttttttcagGAAGAATAGTACTTTGTTCAATCATCTTGCCAAG-ACTCAGACCCCAAAG
EST: gi|124753782|gb|EH843912.1|EH843912
EST:     ATTGAACGAATCAAGACCGGTTTTACTCAATTCAAAACCGAGAAATATTT                         GAAGAATAGTACTTTGTTCAATCATCTTGCCAAGACTCAGACCCCAAAGTT
genomic: ATTGAACGAATCAAGACCGGTTTTACTCAATTCAAAACCGAGAAATATTTgtaagtattt ... tttttttcagGAAGAATAGTACTTTGTTCAATCATCTTGCCAAGACTCAGACCCCAAAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaaggttgattcatggattttgatgaaatctctctgttcataatttttttcagGAAGAATAGTACTTTGTTCAATCATCTTGCCAAGACTCAGACCCCAAAG
                   ttttgat  putative branch site (score: 4)
                                             tttttttc  putative PPT
                                    tgttcataattttttt  TA-rich tract