Sequence
atgc intronic sequence ATGC exonic sequencegtaagaatctattaatcactaaagtctacaaacttagtttctcttacataacatcctttttttggctctagGAATTGTTGATGAGAATGACTTTGGATTCAATATGTAAAGTGGGATTTGGTGTGGAGATAGGGACATTGGCTCCAGAGTTACCAGAGAATCACTTTGCTA
Basic information
species | Arabidopsis thaliana |
transcript | AT1G69500.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G69500.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA07G04840.1 (Glycine max), 3'ss of exon 2
------------------------------------------gtaagaatctattaatcactaaagtctacaaacttagtttctcttacataacatcctttttttggctctagGAATTGTTGATGAGAATGACTTTGGATTCAATATGTAAAGTGGGATTTGGTGTGGAGATAGGGACATTGGCTCCAGAGTTACCAGAGAATCACTTTGCTA
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gtgctacaaacattcttcatgcttataattttttttttcaagttttatttccacaagtctatgaagtaatggaggctagaattggtgacgcttcaaatgttaatt---tctagGAATTGTTGATGAGAATGACTTTAGACTCCATATGTAAGGTTGGATTTGGAGTGGAAATTGGAACATTGGCTCCCAATTTACCAGAGAATAGCTTTGCTC
upper sequence: AT1G69500.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA16G01420.1 (Glycine max), 3'ss of exon 4
---------------------------------gtaagaatcta---ttaatcacta-aagtctacaaactt----agtttctcttacataaca--tcctttttttggctctagGAATTGTTGATGAGAATGACTTTGGATTCAATATGTAAAGTGGGATTTGGTGTGGAGATAGGGACATTGGCTCCAGAGTTACCAGAGAATCACTTTGCTA
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gtgctacaaacattcttcatgcttacatttttttttcaaatttaaattttatttcaataagtctatgaagtagtggaggctacaattggtgacacttcaaatgtcaatttctagGAATTGTTGATGAGAATGACTTTAGACTCCATATGTAAGGTTGGATTTGGAGTGGAAATTGGAACATTGGCTCCCAATTTACCAGAGAATAGCTATGCTC
upper sequence: AT1G69500.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv01s0026g02700.t01 (Vitis vinifera), 3'ss of exon 2
-----------------------------gtaagaatctattaatcactaaagtctacaaacttagtttctcttacataacatcctttttttggctctagGAATTGTTGATGAGAATGACTTTGGATTCAATATGTAAAGTGGGATTTGGTGTGGAGATAGGGACATTGGCTCCAGAGTTACCAGAGAATCACTTTGCTA
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ctaacttaaaatgactacatgttgggatggtgggggcttggtggagacaaaatggaacaattatcattatcatttggcttctgaaaattctattttatagGATTTGCTTATGAGGATGACGTTGGACTCCATATGTAAGGTGGGATTTGGTGTAGAAATTGGGACTTTGGCTCCTAATCTACCAGAAAACTGCTTTGCTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19878849|gb|AU239680.1|AU239680EST: TCACTATCCTTTCCCAAGCATCTTTCAAAGAGCAACAAGTAGATATGCAG GAATTGTTGATGAGAATGACTTTGGATTCAATATGTAAAGTGGGATTTGGT
genomic: TCACTATCCTTTCCCAAGCATCTTTCAAAGAGCAACAAGTAGATATGCAGgtaagaatct ... ttggctctagGAATTGTTGATGAGAATGACTTTGGATTCAATATGTAAAGTGGGATTTGGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cactaaagtctacaaacttagtttctcttacataacatcctttttttggctctagGAATTGTTGATGAGAATGACTTTGGATTCAATATGTAAAGTGGGATTTGGTGTGGAGATAGGGACATTGGCTCCAGAGTTACCAGAGAATCACTTTGCTA
tcctttttttggctct CT-rich tract
ttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagaatctattaatcactaaagtctacaaacttagtttctcttacataacatcctttttttggctctagGAATTGTTGATGAGAATGACTTTGGATTCAATATGTAAAGTGGGATTTGGTGTGGAGATAGGGACATTGGCTCCAGAGTTACCAGAGAATCACTTTGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT