1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgaagatttgaagttactcgtttacttttgttctctccgccttattatgtttctttttgacattcgtaatcttttctgtttgtagAAGAACTCTGAAGCAGCTCAATCACACAGATCCCAGCAGTCTGAGGAAGAACCAGACAACAATGGTGATGAAAAGCGCAATGATGAGCAAAGTCCAAATT
species | Arabidopsis thaliana |
transcript | AT1G68920.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAGAAACCTCTTCCAACACAAAGAAGAGG-AAAGAAATGGGCAG AAGAACTCTGAAGCAGCTCAATCACACAGATCCCAGCAGTCTGAGGAAGAAEST: gi|116476236|gb|EG518828.1|EG518828
genomic: AGAGAAACCTCTTCCAACACAAAGAAGAGGAAAAGAAATGGGCAGgtgaagattt ... ctgtttgtagAAGAACTCTGAAGCAGCTCAATCACACAGATCCCAGCAGTCTGAGGAAGAA
EST: AAGGCAGAGAAACCTCTTCCAACACAAAGAAGAGGAAAAGAAATGGGCAG AAGAACTTTGAAGCAGCTCAATCACACAGATCCCAGCAGTTTGAGGAAGAA
genomic: AAGGCAGAGAAACCTCTTCCAACACAAAGAAGAGGAAAAGAAATGGGCAGgtgaagattt ... ctgtttgtagAAGAACTCTGAAGCAGCTCAATCACACAGATCCCAGCAGTCTGAGGAAGAA
ttctctccgccttattatgtttctttttgacattcgtaatcttttctgtttgtagAAGAACTCTGAAGCAGCTCAATCACACAGATCCCAGCAGTCTGAGGAAGAACCAGACAACAATGGTGATGAAAAGCGCAATGATGAGCAAAGTCCAAATT
ttttgac putative branch site (score: 3)
tcttttctgtttgt putative PPT
ttattatgtttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaagatttgaagttactcgtttacttttgttctctccgccttattatgtttctttttgacattcgtaatcttttctgtttgtagAAGAACTCTGAAGCAGCTCAATCACACAGATCCCAGCAGTCTGAGGAAGAACCAGACAACAATGGTGATGAAAAGCGCAATGATGAGCAAAGTCCAAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG