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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaattcactcacttctcaaattcaaaatctcatgagaattcgttttcactgtgaatttttacaaattgctaattgtgatttgtttcagTCATCAATTGGAGCTTTGTGAATCCAAAGCAGAGACTGATATCTTAGATATCATACTCACCAAG

Basic information

species Arabidopsis thaliana
transcript AT1G68490.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125213111|gb|EL228008.1|EL228008
EST:     CTCCGTAACAACCATCACCATCCTTCTCGATCTCTCCGTTGTTACTTCAG                         TCATCAATTGGAGCTTTGTGA
genomic: CTCCGTAACAACCATCACCATCCTTCTCGATCTCTCCGTTGTTACTTCAGgtatgaattc ... tttgtttcagTCATCAATTGGAGCTTTGTGA
EST: gi|125004788|gb|EL077057.1|EL077057
EST:     TCTCGATCTCTCCGTTGTTACTTCAG                         TCTATCAATTGGAGCTTTGTGAATCCAAAGCAGAGACTGATATCTTAGATA
genomic: TCTCGATCTCTCCGTTGTTACTTCAGgtatgaattc ... tttgtttcagTC-ATCAATTGGAGCTTTGTGAATCCAAAGCAGAGACTGATATCTTAGATA
EST: gi|86051649|gb|DR347404.1|DR347404
EST:     CTCCGTAACAACCATCACCATCCTTCTNGATCTCTCCGTTGTTACTTCAG                         TCATCAATTGGAGCTTTGTGAATCCAAAGCAGAGACTGATATCTTAGATAT
genomic: CTCCGTAACAACCATCACCATCCTTCTCGATCTCTCCGTTGTTACTTCAGgtatgaattc ... tttgtttcagTCATCAATTGGAGCTTTGTGAATCCAAAGCAGAGACTGATATCTTAGATAT
EST: gi|124725001|gb|EH816403.1|EH816403
EST:     CTCCGTAACAACCATCACCATCCTTCTCGATCTCTCCGTTGTTACTTCAG                         TCATCAATTGGAGCTTTGTGAATCCAAAGCAGAGA
genomic: CTCCGTAACAACCATCACCATCCTTCTCGATCTCTCCGTTGTTACTTCAGgtatgaattc ... tttgtttcagTCATCAATTGGAGCTTTGTGAATCCAAAGCAGAGA
EST: gi|125048599|gb|EL120868.1|EL120868
EST:     TCACCATCCTTCTCGATCTCTCCGTTGTTACTTCAG                         TCATCAATTGGAGCTTTGTGAATCCAAAGCAGAGACTGATATCTTAGATAT
genomic: TCACCATCCTTCTCGATCTCTCCGTTGTTACTTCAGgtatgaattc ... tttgtttcagTCATCAATTGGAGCTTTGTGAATCCAAAGCAGAGACTGATATCTTAGATAT
EST: gi|86080128|gb|DR375885.1|DR375885
EST:     TCTCGATCTCTCCGTTGTTACTYCAG                         TCATCAATTGGAGCTTTGTGAATCCAAAGCAGAGACTGATATCTTAGATAT
genomic: TCTCGATCTCTCCGTTGTTACTTCAGgtatgaattc ... tttgtttcagTCATCAATTGGAGCTTTGTGAATCCAAAGCAGAGACTGATATCTTAGATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagaattcgttttcactgtgaatttttacaaattgctaattgtgatttgtttcagTCATCAATTGGAGCTTTGTGAATCCAAAGCAGAGACTGATATCTTAGATATCATACTCACCAAG
                                 tgctaat  putative branch site (score: 2)
                                             tttgtttc  putative PPT
                    aatttttacaaattgc  TA-rich tract