1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgtgattttttttttccttttttggaagattttgtttgttttttgtggcttatggattaggttatggcaatgttgttagagaagattgatagcttatgtgtagtttcaagttccttattgtgcttcttgttagctgatttttatcttatgtgctttggaattttaatagCTTACTGATGAGCTAGCTAAGTTGGATGGGAAGCTCAAGTTAACTGAATCGCTTCTCCAAAGCAAA
species | Arabidopsis thaliana |
transcript | AT1G68060.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTTGTGAAGAG CTTACTGATGAGCTAGCTAAGTTGGATGGGAAGCTCAAGTTAACTGAATCGEST: gi|125290994|gb|EL305079.1|EL305079
genomic: GCTTGTGAAGAGgtgtgatttt ... attttaatagCTTACTGATGAGCTAGCTAAGTTGGATGGGAAGCTCAAGTTAACTGAATCG
EST: TCAAAGCGTTGAGGTTATCTGAGAGACAAAGAGAGAAAGCTTGTGAAGAG CTTACTGATGAGCTAGCTAAGTTGGATGGGAAGCTCAAAGTTAACEST: gi|125270969|gb|EL285054.1|EL285054
genomic: TCAAAGCGTTGAGGTTATCTGAGAGACAAAGAGAGAAAGCTTGTGAAGAGgtgtgatttt ... attttaatagCTTACTGATGAGCTAGCTAAGTTGGATGGGAAGCTCAA-GTTAAC
EST: TCAAAGCGTTGAGGTTATCTGAGAGACAAAGAGAGAAAGCTTGTGAAGAG CTTACTGATGAGCTAGEST: gi|124915251|gb|EH989125.1|EH989125
genomic: TCAAAGCGTTGAGGTTATCTGAGAGACAAAGAGAGAAAGCTTGTGAAGAGgtgtgatttt ... attttaatagCTTACTGATGAGCTAG
EST: TCAAAGCGTTGAGGTTATCTGAGAGACAAAGAGAGAAAGCTTGTGAAGAG CTTACTGATGAGCTAGCTAAGTTGGATGGGAAGCTCAAGTTAAC
genomic: TCAAAGCGTTGAGGTTATCTGAGAGACAAAGAGAGAAAGCTTGTGAAGAGgtgtgatttt ... attttaatagCTTACTGATGAGCTAGCTAAGTTGGATGGGAAGCTCAAGTTAAC
ttattgtgcttcttgttagctgatttttatcttatgtgctttggaattttaatagCTTACTGATGAGCTAGCTAAGTTGGATGGGAAGCTCAAGTTAACTGAATCGCTTCTCCAAAGCAAA
agctgat putative branch site (score: 4)
tgatttttatcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgattttttttttccttttttggaagattttgtttgttttttgtggcttatggattaggttatggcaatgttgttagagaagattgatagcttatgtgtagtttcaagttccttattgtgcttcttgttagctgatttttatcttatgtgctttggaattttaatagCTTACTGATGAGCTAGCTAAGTTGGATGGGAAGCTCAAGTTAACTGAATCGCTTCTCCAAAGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA