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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcattcaatttcttaatcagttttgtagatccttcctcgtatcgtttgatctggttttgattagtgtagttcttgacttatatttcctctggatttttagGTAGACAACAGAAATTCATCAGCAGCCAAGCGTGCTAGAACTGACG

Basic information

species Arabidopsis thaliana
transcript AT1G67325.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116475626|gb|EG518218.1|EG518218
EST:     TTCTCCGGTTATCTCGCTACTAATCAGACTATTCCACAGCTATGTCACAG                         GTAGACAACAGAAATTCATCAGCAGCCAAGCGTGCTAGAACTGACG
genomic: TTCTCCGGTTATCTCGCTACTAATCAGACTATTCCACAGCTATGTCACAGgtaacaacac ... ggatttttagGTAGACAACAGAAATTCATCAGCAGCCAAGCGTGCTAGAACTGACG
EST: gi|116475625|gb|EG518217.1|EG518217
EST:     TTCTCCGGTTATCTCGCTACTAATCAGACTATTCCACAGCTATGTCACAG                         GTAGACAACAGAAATTCATCAGCAGCCAAGCGTGCTAGAACTGACG
genomic: TTCTCCGGTTATCTCGCTACTAATCAGACTATTCCACAGCTATGTCACAGgtaacaacac ... ggatttttagGTAGACAACAGAAATTCATCAGCAGCCAAGCGTGCTAGAACTGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatctggttttgattagtgtagttcttgacttatatttcctctggatttttagGTAGACAACAGAAATTCATCAGCAGCCAAGCGTGCTAGAACTGACG
                         tcttgac  putative branch site (score: 3)
                                     tttcctctg  putative PPT
                              acttatattt  TA-rich tract