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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttcataaaaatttgatatttttagtgacacttttcagattttgttattcaaattcaaattctttttgattatagGTAGAGACTTTGTGGAAAGAACATATGAGACTTTCGAATGTTTCAGAAATGATCAATAAGGATATAATCTCGCATTTTGTTCTTCGTCTCGTTTATTGTA

Basic information

species Arabidopsis thaliana
transcript AT1G67320.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19875223|gb|AU236054.1|AU236054
EST:     TCTCAGATGGATTAGCTCGTGCACGAAACCCTAACGAAATGGATGATCTT                         GTAGAGACTTTGTGGAAAGAACATATGAGACTTTCGAATGTTTCAGAAATG
genomic: TCTCAGATGGATTAGCTCGTGCACGAAACCCTAACGAAATGGATGATCTTgtatgttcat ... ttgattatagGTAGAGACTTTGTGGAAAGAACATATGAGACTTTCGAATGTTTCAGAAATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttagtgacacttttcagattttgttattcaaattcaaattctttttgattatagGTAGAGACTTTGTGGAAAGAACATATGAGACTTTCGAATGTTTCAGAAATGATCAATAAGGATATAATCTCGCATTTTGTTCTTCGTCTCGTTTATTGTA
                                           ttttgat  putative branch site (score: 4)
                                       ttcttttt  CT-rich tract
                  attttgttattcaaat  TA-rich tract