1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gctcaaaatggctctgtttcatccattgcttatgacgagaaacggcatatttaaccatgactggttcatatggtattgaaatatttttccattgatgcagTTGGAAGGGAAATTGTTGACACCTGCCTTGAAAGGCTGAGGAAATTGGCAGACAATTGCACAGGGTTACAAGGATTTTTGGTATTCAATGCTGTTGGGGG
species | Arabidopsis thaliana |
transcript | AT1G64740.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCTGGCAAAGAAGATGCAGCCAATAACTTTGCTAGAGGCCATTACACTG TTGGAAGGGAAATTGTTGACACCTGCCTTGAAAGGCTGAGGAAATTGGCAGEST: gi|116378715|gb|EG421307.1|EG421307
genomic: CTCTGGCAAAGAAGATGCAGCCAATAACTTTGCTAGAGGCCATTACACTGgttattaaca ... attgatgcagTTGGAAGGGAAATTGTTGACACCTGCCTTGAAAGGCTGAGGAAATTGGCAG
EST: CTCTGGCAAAGAAGATGCAGCCAATAACTTTGCTAGAGGCCATTACACTG TTGGAAGGGAAATTGTTGACACCTGCCTTGAAAGGCTGAGGAAATTGGCAG
genomic: CTCTGGCAAAGAAGATGCAGCCAATAACTTTGCTAGAGGCCATTACACTGgttattaaca ... attgatgcagTTGGAAGGGAAATTGTTGACACCTGCCTTGAAAGGCTGAGGAAATTGGCAG
catatttaaccatgactggttcatatggtattgaaatatttttccattgatgcagTTGGAAGGGAAATTGTTGACACCTGCCTTGAAAGGCTGAGGAAATTGGCAGACAATTGCACAGGGTTACAAGGATTTTTGGTATTCAATGCTGTTGGGGG
tttttccatt CT-rich tract
atatggtattgaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctcaaaatggctctgtttcatccattgcttatgacgagaaacggcatatttaaccatgactggttcatatggtattgaaatatttttccattgatgcagTTGGAAGGGAAATTGTTGACACCTGCCTTGAAAGGCTGAGGAAATTGGCAGACAATTGCACAGGGTTACAAGGATTTTTGGTATTCAATGCTGTTGGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
-ctcaaaa
- - - - - - - - - tcatcca
- - - - - - - - - - - - - - - - - - gagaaac