1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttttgtatgtttcgtgctaagatctgaatctacagtgaaatgcttcttgtttccagtcctccagagatgtgatttagtgctctatgtggctgtaatctagGTTTGATGCAGTAATGCATTTTGCTGGATTGAAAGCAGTTGGTGAGAGCGTGGCGAAACCACTTCTGTATTATAACAATAACTTGATTGCGACTATTACA
species | Arabidopsis thaliana |
transcript | AT1G64440.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGGACCTTCGCGATAAACCCGCACTTGAGAAGGTTTTCTCCGAAACAAA GTTTGATGCAGTAATGCATTTTGCTGGATTGAAAGCAGTTGGTGAGAGCGTEST: gi|86052923|gb|DR348680.1|DR348680
genomic: GTGGACCTTCGCGATAAACCCGCACTTGAGAAGGTTTTCTCCGAAACAAAgtgagttttg ... tgtaatctagGTTTGATGCAGTAATGCATTTTGCTGGATTGAAAGCAGTTGGTGAGAGCGT
EST: GTGGACCTTCGCGATAAACCCGCACTTGAGAAGGTTTTCTCCGAAACAAA GTTTGATGCAGTAATGCATTTTGCTGGATTGAAAGCAGTTGGTGAGAGCGTEST: gi|86052920|gb|DR348677.1|DR348677
genomic: GTGGACCTTCGCGATAAACCCGCACTTGAGAAGGTTTTCTCCGAAACAAAgtgagttttg ... tgtaatctagGTTTGATGCAGTAATGCATTTTGCTGGATTGAAAGCAGTTGGTGAGAGCGT
EST: GTGGACCTTCGCGATAAACCCGCACTTGAGAAGGTTTTCTCCGAAACAAA GTTTGATGCAGTAATGCATTTTGCTGGATTGAAAGCAGTTGGTGAGAGCGTEST: gi|86052922|gb|DR348679.1|DR348679
genomic: GTGGACCTTCGCGATAAACCCGCACTTGAGAAGGTTTTCTCCGAAACAAAgtgagttttg ... tgtaatctagGTTTGATGCAGTAATGCATTTTGCTGGATTGAAAGCAGTTGGTGAGAGCGT
EST: GTGGACCTTCGCGATAAACCCGCACTTGAGAAGGTTTTCTCCGAAACAAA GTTTGATGCAGTAATGCATTTTGCTGGATTGAAAGCAGTTGGTGAGAGCGT
genomic: GTGGACCTTCGCGATAAACCCGCACTTGAGAAGGTTTTCTCCGAAACAAAgtgagttttg ... tgtaatctagGTTTGATGCAGTAATGCATTTTGCTGGATTGAAAGCAGTTGGTGAGAGCGT
cttgtttccagtcctccagagatgtgatttagtgctctatgtggctgtaatctagGTTTGATGCAGTAATGCATTTTGCTGGATTGAAAGCAGTTGGTGAGAGCGTGGCGAAACCACTTCTGTATTATAACAATAACTTGATTGCGACTATTACA
tgattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgtatgtttcgtgctaagatctgaatctacagtgaaatgcttcttgtttccagtcctccagagatgtgatttagtgctctatgtggctgtaatctagGTTTGATGCAGTAATGCATTTTGCTGGATTGAAAGCAGTTGGTGAGAGCGTGGCGAAACCACTTCTGTATTATAACAATAACTTGATTGCGACTATTACA
- - - - - - - - - - - -ctgaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctatg