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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttaatactgactatattttaattaataaatactatttaatttattaatactgttaattaatgattacaaaactgaaattgagttttgatgattttaatttaatttttgcaatttttttttagGTTGGAGATGGCAACACCGACCATTACTGTTGGCAGAGACCGGAAGAAATGACGACGGACCGGAAAGCTTACAGGATAGATCCGAGTAATCCCGGGTCGG

Basic information

species Arabidopsis thaliana
transcript AT1G64390.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G64390.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA08G02610.1 (Glycine max), 3'ss of exon 2
gtttaatactgactatattttaattaataaatactatttaatttattaatactgttaattaatgat-tacaaaactgaaattgagttttgatgattttaatttaatttttgcaatttttttttagGTTGGAGATGGCAACACCGACCATTACTGTTGGCAGAGACCGGAAGAAATGACGACGGACCGGAAAGCTTACAGGATAGATCCGAGTAATCCCGGGTCGG
||    || |  || ||||||||||   | | | | ||| |||  |   |    |||  |  |  |  || ||   | |||| | || |||  |    ||| |  ||  ||   |     || |||| |||||||| ||||| ||||||||||||||||| ||||| || || ||||| || |||||  | || |||| | | |||||||| |||||||| || |
gtaccttattttct-tattttaattttaatacaatgttttattcctagttgaatttagatgctattacaccaagtagtaatttatttatgaataaag-aatgtcgttggtgttgtgacaatt-agGTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATGACAACCGACCGTCATGCCTACAAGGTCGATCCGAGCAATCCCGGTTCCG

upper sequence: AT1G64390.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA05G36930.1 (Glycine max), 3'ss of exon 2
----------gtttaatactgactatattttaattaataaatactatttaatttattaatactgttaattaatgattacaaaactgaaattgagttttgatgattttaatttaatttttgcaatttttt---tttagGTTGGAGATGGCAACACCGACCATTACTGTTGGCAGAGACCGGAAGAAATGACGACGGACCGGAAAGCTTACAGGATAGATCCGAGTAATCCCGGGTCGG
           | | ||  | |   ||  ||  ||      || | |||| | ||    |  ||||  |   ||| |  | |  | | ||  |||  | ||   ||||  ||  | ||     |||||     |||||| ||||| || ||||| ||||||||||||||||| || || || || ||||| || |||||  | || |||| ||| ||||| || |||||||||||||
gtacctttttttgttattttaatagtaaatttgttcggggttattttttattataaatgttttgttcgtagttgaatttagatgttacatgtagtagtaatttatttatgttggtgttgtgggtttttgacaattagGTGGGAGACGGGAACACTGACCATTACTGTTGGCAAAGGCCAGAGGACATGACAACCGACCGTCATGCCTACAAGATCGATCCAAGCAATCCCGGGTCGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116479730|gb|EG522322.1|EG522322
EST:     GCCCATCCTGAGCCCAACGTCCTTTACGGCGAG                         GTTGGAGATGGCAACACCGACCATTACTGTTGGCAGAGACCGGAAGAAATG
genomic: GCCCATCCTGAGCCCAACGTCCTTTACGGCGAGgtttaatact ... ttttttttagGTTGGAGATGGCAACACCGACCATTACTGTTGGCAGAGACCGGAAGAAATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaactgaaattgagttttgatgattttaatttaatttttgcaatttttttttagGTTGGAGATGGCAACACCGACCATTACTGTTGGCAGAGACCGGAAGAAATGACGACGGACCGGAAAGCTTACAGGATAGATCCGAGTAATCCCGGGTCGG
                                            ttttttttt  CT-rich tract
               ttttgatgattttaat  TA-rich tract