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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagagattttgttttgagatgttgaacaagctcttctgctaaacatctatgaatgattcattgattatttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCATTGGAGCTAAAGAATTGGCAACTTCAG

Basic information

species Arabidopsis thaliana
transcript AT1G64350.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86044882|gb|DR340637.1|DR340637
EST:     CAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAAGATG
genomic: CAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAA-GATG
EST: gi|116480252|gb|EG522844.1|EG522844
EST:     GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG                         GTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
EST: gi|86044893|gb|DR340648.1|DR340648
EST:     GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG                         GTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
EST: gi|86044886|gb|DR340641.1|DR340641
EST:     GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG                         GTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
EST: gi|86044884|gb|DR340639.1|DR340639
EST:     GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG                         GTTGCTGCATATTCTGATGGGTAC-TTAGGGTTTTTGAGCTCTTGAATCCA
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
EST: gi|86044891|gb|DR340646.1|DR340646
EST:     GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG                         GTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
EST: gi|116457542|gb|EG500134.1|EG500134
EST:     GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG                         GTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
EST: gi|86044879|gb|DR340634.1|DR340634
EST:     GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG                         GTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
EST: gi|86044883|gb|DR340638.1|DR340638
EST:     GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG                         GTTGCTGCATATTCTGATGGGTAC-TTAGGGTTTTTGAGCTCTTGAAT
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAAT
EST: gi|86044881|gb|DR340636.1|DR340636
EST:     GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG                         GTTGCTGCATATTCTGATGGGTAC-TTAGGG
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGG
EST: gi|86044894|gb|DR340649.1|DR340649
EST:     GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG                         GTTGCTGCATATTCTGATGGAGTAC-TTAGGGTTTT
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGG-GTACCTTAGGGTTTT
EST: gi|86044887|gb|DR340642.1|DR340642
EST:     GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG                         GTTGCTGCATATTC
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTC
EST: gi|125032113|gb|EL104382.1|EL104382
EST:     GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG                         GTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTC
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTC
EST: gi|86044877|gb|DR340632.1|DR340632
EST:     GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG                         GTTGCTGCATATTCTGATGGGTAC-TTAGGGTTTTTGAGCTCTTGAATCCA
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
EST: gi|116430790|gb|EG473382.1|EG473382
EST:     GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG                         GTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
EST: gi|116430791|gb|EG473383.1|EG473383
EST:     GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG                         GTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
EST: gi|86044878|gb|DR340633.1|DR340633
EST:     GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG                         GTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaacaagctcttctgctaaacatctatgaatgattcattgattatttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCATTGGAGCTAAAGAATTGGCAACTTCAG
                                           ttattttt  CT-rich tract
                              aatgattcattgatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagagattttgttttgagatgttgaacaagctcttctgctaaacatctatgaatgattcattgattatttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCATTGGAGCTAAAGAATTGGCAACTTCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA