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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaactctaagaattagattgagtctatctcccttgagtgtttctggaggtatattaacagttaattttccaatgtggttttagTGGACATCTTGGATGACATGTTGTCTGGGATTGGATGGACGATGCAAGAGTATTTGAAACATGGCGAACACGATTACTATCCGCCTTTGGCAAATGGTCA

Basic information

species Arabidopsis thaliana
transcript AT1G63680.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G63680.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv02s0025g03410.t01 (Vitis vinifera), 3'ss of exon 2
-------gtaa-gtaactctaagaattagattgagtc-tatctcccttgagtgtttctggaggtata---ttaacagtta-attttccaatgtggttttagTGGACATCTTGGATGACATGTTGTCTGGGATTGGATGGACGATGCAAGAGTATTTGAAACATGGCGAACACGATTACTATCCGCCTTTGGCAAATGGTCA
         |  | || |  |   || |||| | |   ||| |   |        |||||| |  ||   ||||||  |  || ||   || |   || |||||||||||||||||| |||||| ||||  | |||||||| ||||| || || |||||| |||| | | | |||||||| |||||| |  |||| |||||
agtacacacactggaagtaaagtgataagatagtgctgtatgttagtaccaaccatctggaagcctaattttaacacctggatgttttcatctt-cttcagTGGACATCTTGGATGATATGTTGGCTGGCGTGGGATGGACAATGCACGATTACTTGAAATATGGGGCAAATGATTACTACCCGCCTCTTCCAAACGGTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcccttgagtgtttctggaggtatattaacagttaattttccaatgtggttttagTGGACATCTTGGATGACATGTTGTCTGGGATTGGATGGACGATGCAAGAGTATTTGAAACATGGCGAACACGATTACTATCCGCCTTTGGCAAATGGTCA
                     tatattaacagttaat  TA-rich tract