Sequence
atgc intronic sequence ATGC exonic sequencegtgtgaccttgttcttgtgcctttaccttacttttcattgtagtttttagatgtttcaatacttatacttttcccttacagTGAATACCAAAGTAGATATGCGCTTCAATGTTAAGAACGCGTATTGGCTGAGTGACAGGATCAGAGAGAAAATCTTACTGACG
Basic information
species | Arabidopsis thaliana |
transcript | AT1G62850.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G62850.3 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA17G14410.1 (Glycine max), 3'ss of exon 2
gtgtgaccttgttcttgtgcc--tttaccttacttttcattgtagtttttagatgtttcaatacttatacttttcccttacagTGAATACCAAAGTAGATATGCGCTTCAATGTTAAGAACGCGTATTGGCTGAGTGACAGGATCAGAGAGAAAATCTTACTGACG
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gttcgttcattgttttgtttcatttcactttatgccattctgaggaggctcattagttctgtttgtttgtgctgattggacagTGAACACCAAGGTGGACATGCGCTTCAATGTTAAAAATGCATATTGGTTGAGTGACAGGATCAGAGACAAGATTTTGCAAACG
upper sequence: AT1G62850.3 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv02s0241g00090.t01 (Vitis vinifera), 3'ss of exon 3
----------------------------------gtgtgaccttg-ttcttgtgcctttaccttacttttc--attgtagtttttagatgtttcaata---cttatacttttccct---tacagTGAATACCAAAGTAGATATGCGCTTCAATGTTAAGAACGCGTATTGGCTGAGTGACAGGATCAGAGAGAAAATCTTACTGACG
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gtctgttctttgtcgttttatatactaaatctttatttgatttcccttcttacttccctgttttttttttttgatcagactcttcttacttcttattgaggcttatttccattactggttacagTGAACACAAAGGTGGACATGCGCTTCAATGTTAAAAATGCTTATTGGCTAAGCGACAGGGTCAGGGAGAGGATTATGCAAATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125303429|gb|EL317514.1|EL317514EST: ACTTAACTTTGCTAGAAGTGGTGGTCCTGGAGGCCAGAATGTGAACAAAT TGAATACCAAAGTAGATATGCGCTTCAATGTTAAGAACGCGTATTGG
genomic: ACTTAACTTTGCTAGAAGTGGTGGTCCTGGAGGCCAGAATGTGAACAAATgtgtgacctt ... tcccttacagTGAATACCAAAGTAGATATGCGCTTCAATGTTAAGAACGCGTATTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttacttttcattgtagtttttagatgtttcaatacttatacttttcccttacagTGAATACCAAAGTAGATATGCGCTTCAATGTTAAGAACGCGTATTGGCTGAGTGACAGGATCAGAGAGAAAATCTTACTGACG
accttac putative branch site (score: 3)
cttatacttttccctt putative PPT
aatacttatactttt TA-rich tract