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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttagtttgattttacattagtaatatttaatagatgaataatttgaaccggtttgattaatatttcgatttttttttgtttatcacagTTGGTGAAATTACAAGATGAGTTGAAGAAAATGACAATGGATAATCAAAAGCTTAGAGAATTGCTTACACAAGTTAGCAACAGTTACACTTCACTTCAGA

Basic information

species Arabidopsis thaliana
transcript AT1G62300.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124970181|gb|EL044028.1|EL044028
EST:     CGAAATGGAAGATAAGCGTGCGAAAAATGAG                         TTGGTGAAATTACAAGATGAGTTGAAGAAAATGACAATGGATAATCAAAAG
genomic: CGAAATGGAAGATAAGCGTGCGAAAAATGAGgtaagtttag ... tttatcacagTTGGTGAAATTACAAGATGAGTTGAAGAAAATGACAATGGATAATCAAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaataatttgaaccggtttgattaatatttcgatttttttttgtttatcacagTTGGTGAAATTACAAGATGAGTTGAAGAAAATGACAATGGATAATCAAAAGCTTAGAGAATTGCTTACACAAGTTAGCAACAGTTACACTTCACTTCAGA
                     gattaat  putative branch site (score: 3)
 tttttttttgtttatc  putative PPT
 tttgattaatatttcg  TA-rich tract