Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtaattaaagttttcgtctcttcggcaagttatacatccatctgtatactgctcctaagtttttttgtgtttgttcttttgatttcatcaagTTTTGTAACTCACGCAACAACTCGATTTCATCGGATGATGAGTACCGTTCATCACCCAACATAGCTATAAGTCTTTTAAGACGTTACAGGACCGTGATTG

Basic information

species Arabidopsis thaliana
transcript AT1G62250.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G62250.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA17G01560.1 (Glycine max), 3'ss of exon 1
gttagtaattaaagttttcgtctcttcggcaagttatacatccatctgtatactgctcctaagtttttttg-tgtttgttcttttgatttcatcaagTTTTGTAACTCACGCAACAACTCGATTTCATCGGATGATGAGTACCGTTCATCACCCAACATAGCTATAAGTCTTTTAAGACGTTACAGGACCGTGATTG------
    |||| ||   ||   |  || |   |  ||  |   |   | | | ||    |  | | |  | | | || ||  | ||||  |  | |       |||   | ||   |  | || |||||||| ||||||||||| ||||| |||| ||||||||| || ||  | || || || ||||||| | | ||||      
----gtaactatgcttgctggatcatttacttgtgttgt-ttagtttatttatcaattatcattgctctcgctgattcatttttttctcccttactacagTGTGGATTAC---AGGATTCCATTTCATCTGATGATGAGTATCGTTCTTCACGCAACATAGCCATCAGCTTGTTCAGGCGATACAGGAACTTCATTGATCGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatctgtatactgctcctaagtttttttgtgtttgttcttttgatttcatcaagTTTTGTAACTCACGCAACAACTCGATTTCATCGGATGATGAGTACCGTTCATCACCCAACATAGCTATAAGTCTTTTAAGACGTTACAGGACCGTGATTG
                                       ttttgat  putative branch site (score: 4)
                                             tttcatc  CT-rich tract
                  taagttttttt  TA-rich tract