Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttcttgttttaacttgatcacttttctctattagtaatttgctttttgtaatttactaatcggtattagttttttcgtgtatcttcagGGCTTTGCTCGCTTAATTTCAGTGCGTCTGAGAGTTTGATTCAGACTACTTCACACAACTGTTGGACTGTTTTTGCTCCATTGTTGGCAAATGTGATGTG

Basic information

species Arabidopsis thaliana
transcript AT1G61900.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125080783|gb|EL142254.1|EL142254
EST:     TACATAAATAGTACCATGCCTAAACTATCAG                         GGCTTTGCTCGCTTAATTTCAGTGCGTCTGAGAGTTTGATTCAGACTACTT
genomic: TACATAAATAGTACCATGCCTAAACTATCAGgtttgttctt ... gtatcttcagGGCTTTGCTCGCTTAATTTCAGTGCGTCTGAGAGTTTGATTCAGACTACTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatttgctttttgtaatttactaatcggtattagttttttcgtgtatcttcagGGCTTTGCTCGCTTAATTTCAGTGCGTCTGAGAGTTTGATTCAGACTACTTCACACAACTGTTGGACTGTTTTTGCTCCATTGTTGGCAAATGTGATGTG
                    tactaat  putative branch site (score: 1)
                                              tatcttc  putative PPT
         tttttgtaatttacta  TA-rich tract