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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatgacagtctctattctttcacagatctctctctttctctatgtactgaataatctgatcttgattttgtgttttggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG

Basic information

species Arabidopsis thaliana
transcript AT1G61520.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G61520.3 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA02G47960.1 (Glycine max), 3'ss of exon 1
gtacatgacagtctctattctttcacagatctctctctttctctatgtactgaataatctgatcttgattttgtgt-tttggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG
||   | |    |||| |   |  |    | | | | ||| | | |  |||      |   |     | | | | | ||| | | ||||||||||| |  ||||||| ||||||||||| |||  ||| ||||| |||||||||||||||||
gtctgtaatt-cctctctcactcaatgtgtttttatatttttatctacacttgtacttaaaaaaaaaactctctttcttttggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCTTACTTGGATGGCAG

upper sequence: AT1G61520.3 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA14G00640.1 (Glycine max), 3'ss of exon 1
----------------gtacatgaca-gtctctattctttcacagatctctctctttctctatgtactgaataatctgatcttgattttgtgttttggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG
                  || |||   || | |||  |||||   |    |    || | | | ||   || ||    | |||  |||    ||||||| || ||||||||| |  ||||||| ||||||||||| |||  ||| ||||| || ||||||||||||||
gtctgtaattcctctctcacttgatgtgtttttatgttttcatctacactttcacttttttttataaaaaaaaa----aactttctttc---ttttggtgtt-cagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTACTTGGATGGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47832212|gb|CK121896.1|CK121896
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|124936780|gb|EL013630.1|EL013630
EST:     CTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: CTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|124918741|gb|EH992552.1|EH992552
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTT
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTT
EST: gi|125283950|gb|EL298035.1|EL298035
EST:     CCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: CCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|125070045|gb|EL135604.1|EL135604
EST:     CTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: CTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|124814829|gb|EH899695.1|EH899695
EST:     CTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: CTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|124910209|gb|EH984289.1|EH984289
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGC
EST: gi|125028814|gb|EL101083.1|EL101083
EST:     AAGAAGAGTTCCTTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTC
genomic: AAGAAGAGTTCC-TTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTC
EST: gi|116427572|gb|EG470164.1|EG470164
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|124831870|gb|EH916309.1|EH916309
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAAGGAGCCAACAGACCATTGTGGTTTGC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAA-GGAGCCAACAGACCATTGTGGTTTGC
EST: gi|124716976|gb|EH808378.1|EH808378
EST:     GAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAAG                         CAAGGAGCCAACAGACCTTTGTGGTTTGC
genomic: GAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAA-Ggtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGC
EST: gi|164087000|gb|ES001543.1|ES001543
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTC
EST: gi|124720284|gb|EH811686.1|EH811686
EST:     CTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: CTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|125017260|gb|EL089529.1|EL089529
EST:     GAAGAAGAGTTCCTTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTG
genomic: GAAGAAGAGTTCC-TTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTG
EST: gi|125047821|gb|EL120090.1|EL120090
EST:     TTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: TTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|125074970|gb|EL138713.1|EL138713
EST:     AAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTTGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: AAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|124926723|gb|EL004522.1|EL004522
EST:     CAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: CAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|116429319|gb|EG471911.1|EG471911
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAGGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|125022159|gb|EL094428.1|EL094428
EST:     GTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: GTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|125263605|gb|EL277690.1|EL277690
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTTGGTTTGCTT
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGT-GGTTTGCTT
EST: gi|125164505|gb|EL191202.1|EL191202
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATC
EST: gi|124787605|gb|EH877284.1|EH877284
EST:     CCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: CCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|47832033|gb|CK121717.1|CK121717
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|86058741|gb|DR354498.1|DR354498
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCAAACAGACCATTGTGGTTTGCATCATCGCAGAGTCTCTCTTAC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|124846894|gb|EH931331.1|EH931331
EST:     AAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: AAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|125274441|gb|EL288526.1|EL288526
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAAGACCATTGTGGTTTGCTTCATCGCA
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACA-GACCATTGTGGTTTGCTTCATCGCA
EST: gi|125247405|gb|EL261490.1|EL261490
EST:     AACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: AACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|125273344|gb|EL287429.1|EL287429
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCA
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCA
EST: gi|125115637|gb|EL165518.1|EL165518
EST:     CTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: CTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|124765286|gb|EH855416.1|EH855416
EST:     TTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAGCAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: TTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|125303923|gb|EL318008.1|EL318008
EST:     AGAAGAGGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTTAAG                         CAAGGAGCCAACAGACCATTGTGGTTTG
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTG
EST: gi|86058743|gb|DR354500.1|DR354500
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCAAACAGACCATTGTGGTTTGCATCATCGCAGAGTCTCTCTTAC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|125246369|gb|EL260454.1|EL260454
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTG
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTG
EST: gi|125035220|gb|EL107489.1|EL107489
EST:     GAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTACAAG                         CAAGGAGCCAACAGACCATTG
genomic: GAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGT-CAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTG
EST: gi|125003059|gb|EL075328.1|EL075328
EST:     CTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: CTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|86058745|gb|DR354502.1|DR354502
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCAAACAGACCATTGTGGTTTGCATCATCGCAGAGTCTCTCTTAC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|124825629|gb|EH910495.1|EH910495
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCG
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCG
EST: gi|124839411|gb|EH923850.1|EH923850
EST:     CTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: CTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|47828390|gb|CK118074.1|CK118074
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|125020935|gb|EL093204.1|EL093204
EST:     CTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: CTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|124948857|gb|EL024557.1|EL024557
EST:     AAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTA
genomic: AAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTA
EST: gi|124841545|gb|EH925982.1|EH925982
EST:     AAGAAGAGTTCCTTTTGTTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACC
genomic: AAGAAGAGTTCCTTT-GTT-GTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACC
EST: gi|124863211|gb|EH947648.1|EH947648
EST:     AAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: AAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|125066383|gb|EL133276.1|EL133276
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACA
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACA
EST: gi|124911359|gb|EH985439.1|EH985439
EST:     GAAGAAGAGTTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCA
genomic: GAAGAAGAG-TTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCA
EST: gi|86058746|gb|DR354503.1|DR354503
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCAAACAGACCATTGTGGTTTGCATCATCGCAGAGTCTCTCTTAC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|124742354|gb|EH833516.1|EH833516
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGC
EST: gi|124804830|gb|EH892391.1|EH892391
EST:     TTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATACGCAGAGTCTCTCTTA
genomic: TTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCAT-CGCAGAGTCTCTCTTA
EST: gi|125212647|gb|EL227601.1|EL227601
EST:     AGAAGAAGAGTTCCTCTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGG
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGG
EST: gi|124862656|gb|EH947093.1|EH947093
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTC
EST: gi|124969367|gb|EL043275.1|EL043275
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGT
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGT
EST: gi|124982654|gb|EL055444.1|EL055444
EST:     GAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAAG                         CAAGGAGCCAACAGACCATTGTG
genomic: GAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAA-Ggtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTG
EST: gi|125033566|gb|EL105835.1|EL105835
EST:     AACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: AACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|164088827|gb|ES091466.1|ES091466
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTACTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATT
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATT
EST: gi|124799429|gb|EH889108.1|EH889108
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCG
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCG
EST: gi|125306427|gb|EL320512.1|EL320512
EST:     TTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCAATCGCAGAGTCTCTCTTA
genomic: TTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCA-TCGCAGAGTCTCTCTTA
EST: gi|164118920|gb|ES141306.1|ES141306
EST:     CTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: CTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|164102330|gb|ES202463.1|ES202463
EST:     GAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTAGCAACTCCACCTGTCAAG                         CAAGGAGCCAAC
genomic: GAAGAAGAGTTCCTTTGTTGTTAAAGCTGCT-GCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAAC
EST: gi|124909815|gb|EH983895.1|EH983895
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAAC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAAC
EST: gi|125282779|gb|EL296864.1|EL296864
EST:     TCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: TCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|152035165|gb|BP846580.2|BP846580
EST:     GAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTA
genomic: GAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCT-GTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTA
EST: gi|124864345|gb|EH948782.1|EH948782
EST:     CTCCACCTGTCAAG                         CAAGGAGCCAACAGGCCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: CTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|125024065|gb|EL096334.1|EL096334
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCCGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACC
EST: gi|124730647|gb|EH822049.1|EH822049
EST:     GTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCGAG                         CAAGGAGCCAACAGACCATTGTGGTT
genomic: GTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTT
EST: gi|125203323|gb|EL218277.1|EL218277
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTT
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTT
EST: gi|47828074|gb|CK117758.1|CK117758
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCCTCATCGCAGAGTCTCTCTTAC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|125085438|gb|EL145278.1|EL145278
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTT
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTT
EST: gi|125157361|gb|EL186505.1|EL186505
EST:     TTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: TTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|125071067|gb|EL136251.1|EL136251
EST:     AGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTA
genomic: AGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTA
EST: gi|47829362|gb|CK119046.1|CK119046
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|47828850|gb|CK118534.1|CK118534
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|164081651|gb|ES001462.1|ES001462
EST:     GAAGAAGAAG-TCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTC
genomic: GAAGAAG-AGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctttctctatgtactgaataatctgatcttgattttgtgttttggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG
                            tcttgat  putative branch site (score: 4)
                                               tttttc  putative PPT
                tgaataat  TA-rich tract