Sequence
atgc intronic sequence ATGC exonic sequence...tgggaaaactcaagatactcttctggttggattaatgcgactgacattattattatatagtttggtgtgttgatttgtaccacaaatcaaaattttgcagCTAGACGATTGGGTTCTATGTAGGATCTATAAGAAGAATAGTTCACAAAGACCAACAATGGAGAGAGTATTACTTAGAGAGGATCTAATGGAAGGCATGC
Basic information
species | Arabidopsis thaliana |
transcript | AT1G61110.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86046312|gb|DR342067.1|DR342067EST: CTGCGGCTAAGCCGCCTGACTTAACCACGACAAGGAAAAACTCACTACGG CTAGACGATTGGGGTCTATGTAGGATCTATAAGAAGAATAGTTCACAAAGA
genomic: CTGCGGCTAAGCCGCCTGACTTAACCACGACAAGGAAAAACTCACTACGGgtatgtgaaa ... aattttgcagCTAGACGATTGGGTTCTATGTAGGATCTATAAGAAGAATAGTTCACAAAGA
EST:
gi|86046313|gb|DR342068.1|DR342068EST: CTGCGGCTAAGCCGCCTGACTTAACCACGACAAGGAAAAACTCACTACGG CTAGACGATTGGGTTCTATGTAGGATCTATAAGAAGAATAGTTCACAAAGA
genomic: CTGCGGCTAAGCCGCCTGACTTAACCACGACAAGGAAAAACTCACTACGGgtatgtgaaa ... aattttgcagCTAGACGATTGGGTTCTATGTAGGATCTATAAGAAGAATAGTTCACAAAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attattattatatagtttggtgtgttgatttgtaccacaaatcaaaattttgcagCTAGACGATTGGGTTCTATGTAGGATCTATAAGAAGAATAGTTCACAAAGACCAACAATGGAGAGAGTATTACTTAGAGAGGATCTAATGGAAGGCATGC
tgttgat putative branch site (score: 4)
acaaatcaaaatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgggaaaactcaagatactcttctggttggattaatgcgactgacattattattatatagtttggtgtgttgatttgtaccacaaatcaaaattttgcagCTAGACGATTGGGTTCTATGTAGGATCTATAAGAAGAATAGTTCACAAAGACCAACAATGGAGAGAGTATTACTTAGAGAGGATCTAATGGAAGGCATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - -aaactca
- - - - - - - - -ctcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatcaa